View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-8 (Length: 445)
Name: NF0979-INSERTION-8
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-8 |
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| [»] chr6 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 225 - 445
Target Start/End: Original strand, 29176286 - 29176506
Alignment:
| Q |
225 |
aacatattatcgcaacaacaacagcaactcgcggcaatgattctttggactctatggaagaatcgtaactccaaactttgggaaaatgtcgatcaaccac |
324 |
Q |
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| T |
29176286 |
aacagattatcgcaacaacaacagcaactcgcggcaatgattctttggactctatggaagaatcgtaactccaaactttgggagaatgtcgatcaaccac |
29176385 |
T |
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| Q |
325 |
cgtctttcatggtcaaacgcgcactagattcactcaatgaatgtcgttttatgcagagagttaggaaactcggtcaaccaccgcaaatagcatattcatg |
424 |
Q |
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| T |
29176386 |
cgcctttcatggtcaaacacgcactagattcactcaatgaatgtcattttatgcaaagagttgggaaactcggtcaaccaccgcaaatagcatattcatg |
29176485 |
T |
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| Q |
425 |
gacaaagccttcatttgcaac |
445 |
Q |
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| T |
29176486 |
gacaaagccttcatttgcaac |
29176506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 29176065 - 29176257
Alignment:
| Q |
8 |
gcccatagctgcctacctacacgagcccggttgaatcaagagggtgtccactgtgaagagtcttgtgtaagctgcaaagttttggcggaaacgcatatgc |
107 |
Q |
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| T |
29176065 |
gcccatagctgcctacctacacgagctcggttgaatcaagagggtgtccattgtgaagagtcttgtgtaagctgcgaagttttggtggaaacgcatatgc |
29176164 |
T |
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| Q |
108 |
atgttttctttatgtgtctataaaaacttcagcatattgggatttggtgcaactaggcaccatggttcatgaaa----ggtcaatgcaaatga |
196 |
Q |
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| T |
29176165 |
atgttttctttgtgtgtctataaaagcttcagcatattgggatttggtgcaactaagcaccatggttcatgaaatgctggtcaatgcaaatga |
29176257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 230 - 445
Target Start/End: Original strand, 11254715 - 11254930
Alignment:
| Q |
230 |
attatcgcaacaacaacagcaactcgcggcaatgattctttggactctatggaagaatcgtaactccaaactttgggaaaatgtcgatcaaccaccgtct |
329 |
Q |
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| T |
11254715 |
attatcccaacaacaacagcaactcgcgacaatgattctttggactctatggaagaatcgtaactccatactttgggagaatgtcgatcagccaccgtct |
11254814 |
T |
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| Q |
330 |
ttcatggtcaaacgcgcactagattcactcaatgaatgtcgttttatgcagagagttaggaaactcggtcaaccaccgcaaatagcatattcatggacaa |
429 |
Q |
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| T |
11254815 |
ttcatggtcaaacacgcactagattcactcaatgaatgacagtttatgcagagggctgggaaactcgatcaaccaccacaaacaacatattcatggacaa |
11254914 |
T |
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| Q |
430 |
agccttcatttgcaac |
445 |
Q |
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| T |
11254915 |
agcctccatctgcaac |
11254930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 11254493 - 11254662
Alignment:
| Q |
8 |
gcccatagctgcctacctacacgagcccggttgaatcaagagggtgtccactgtgaagagtcttgtgtaagctgcaaagttttggcggaaacgcatatgc |
107 |
Q |
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| T |
11254493 |
gcccatacctgcctacctacgcgagctcagttgaatcaaaagggtgtccactgtgaagaatcttgtgtaagctgcgaagttttgacggaaacgcatatgc |
11254592 |
T |
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| Q |
108 |
atgttttctttatgtgtctataaaaacttcagcatattgggatttggtgcaactaggcaccatggttcatgaaa |
181 |
Q |
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| T |
11254593 |
atgttttctt--tgtgtc--caaaagcttcagcatgttgggatttggtgcaactaggcaccacggttcgtgaaa |
11254662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 272 - 445
Target Start/End: Complemental strand, 36937519 - 36937348
Alignment:
| Q |
272 |
gactctatggaagaatcgtaactccaaactttgggaaaatgtcgatcaaccaccgtctttcatggtcaaacgcgcactagattcactcaatgaatgtcgt |
371 |
Q |
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| T |
36937519 |
gactctacggaagaatcgtaactccaaactttgggagaatttcgatcagccaccgtcttttatggtcaaatgcgcactagagtcactcaatgaatggcaa |
36937420 |
T |
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| Q |
372 |
tttatgcagagagttaggaaactcggtcaaccaccgcaaatagcatattcatggacaaagccttcatttgcaac |
445 |
Q |
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| T |
36937419 |
tgtatgcatagagttaggaaa--cggtcaatcatcgcaaacaacatattcatggacaaagcctccatttgcaac |
36937348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 393
Target Start/End: Original strand, 30840466 - 30840616
Alignment:
| Q |
243 |
caacagcaactcgcggcaatgattctttggactctatggaagaatcgtaactccaaactttgggaaaatgtcgatcaaccaccgtctttcatggtcaaac |
342 |
Q |
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| T |
30840466 |
caacagcaacttgtggcaatgattctttggagtctttggaagaatcgcaactccaaactttgggagaatgtcgatcaaccaccatctatcatggtcagat |
30840565 |
T |
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| Q |
343 |
gcgcactagattcactcaatgaatgtcgttttatgcagagagttaggaaac |
393 |
Q |
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| T |
30840566 |
gcgcatgagagtcacttcacgaatggcagtttatgcagaaagctaggaaac |
30840616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 30840232 - 30840329
Alignment:
| Q |
11 |
catagctgcctacctacacgagcccggttgaatcaagagggtgtccactgtgaagagtcttgtgtaagctgcaaagttttggcggaaacgcatatgca |
108 |
Q |
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| T |
30840232 |
catagctgcctacctacacgtacccggttgaataaaagaggtgtccactgtgaagagtcttgtgtaagctgtgaagtcatggcggaaacccatatgca |
30840329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 8071622 - 8071574
Alignment:
| Q |
259 |
caatgattctttggactctatggaagaatcgtaactccaaactttggga |
307 |
Q |
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| T |
8071622 |
caatgattctttggagtttgtggaagaatcgtaactctaagctttggga |
8071574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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