View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-9 (Length: 433)
Name: NF0979-INSERTION-9
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 433
Target Start/End: Complemental strand, 36440282 - 36439860
Alignment:
| Q |
8 |
tttgtgacactatatgtagagagtggtcgtcaattataccacaattgtgcgatttttggaacgatcaacttcatcttcaacctactttgattcaatgcga |
107 |
Q |
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| T |
36440282 |
tttgtgacactatatgtagagagtggtcgtcaattataccacaattgtgcgatttttggaacgatcaacttcatcttcaacctactttgattcaatgcga |
36440183 |
T |
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| Q |
108 |
ggatgtcgagtcaaggactaaagaactttgtgatagcagatcattgcaaaacttgaatggttcttcaaaactgctcaatcgatcatctgatcagatgttg |
207 |
Q |
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| T |
36440182 |
ggatgtcgagtcaaggactaaagaactttgtgatagcagatcattgcaaaacttgaatggttcttcagaactgctca----atcatctgatcagatgttg |
36440087 |
T |
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| Q |
208 |
aac---aaccttatcaatcaaccgtgaaggcttacttggcaaggccgtggaggccattttcaagggcagtctacatcaacaattatatggatgattatat |
304 |
Q |
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| T |
36440086 |
aactcataccttatcaatcaaccgtgaaggcttacttggcaaggccgtggaggccattttcaagggcagtctacatcaacaattatatggatgattatat |
36439987 |
T |
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| Q |
305 |
tcatcaaaatgggtacattattcggaactcaatgaacccaaacaccaagaactcttacttcgcgaagtttggccacactagacttagggccaatgctaca |
404 |
Q |
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| T |
36439986 |
tcatc--aatgggtacattattcggaactcaatgaacccaaacaccaagaactcttacttcgcgaagtttggccacactagacttagggccaatgctaca |
36439889 |
T |
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| Q |
405 |
tcaagagtgaaattagcaaaatgtcttat |
433 |
Q |
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| T |
36439888 |
tcaagagtgaaatgagcaaaatgtcttat |
36439860 |
T |
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