View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979_low_1 (Length: 429)
Name: NF0979_low_1
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 87 - 429
Target Start/End: Original strand, 1350565 - 1350907
Alignment:
| Q |
87 |
catgaagaacattactttaagaaaccttccaggcatatatcacacaacagatccaaatgatacacttttggactttgttatagaacaaatagaagcagct |
186 |
Q |
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| T |
1350565 |
catgaagaacattactttaagaaaccttccaggcatatatcacacaacagatccaaatgatacacttttggactttgttacagaacaaatagaagcagct |
1350664 |
T |
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| Q |
187 |
tcaaaagcttctgctattattctaccaacttttgatgccctggagtatgatgtattgaatgagctctccacaatgtttcctaaactctacacattaggcc |
286 |
Q |
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| T |
1350665 |
tcaaaagcttctgctattattctaccaacttttgatgccctggagtatgatgtattgaatgagctctccacaatgtttcctaaactctacacattaggcc |
1350764 |
T |
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| Q |
287 |
cacttgatttgttccttgataaaatttcagaaaataatggatttgaatctattcaatgctatttgtggaaagaagagagtgagtatctcaaatggctaga |
386 |
Q |
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| T |
1350765 |
cacttgatttgttccttgataaaatttcagaaaataatggatttgaatctattcaatgcaatttgtggaaagaagagagtgagtgtctcaaatggctaga |
1350864 |
T |
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| Q |
387 |
ttcacaggaagaaaattctgttctctatgtgaattttggaagt |
429 |
Q |
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| T |
1350865 |
ttcacaggaagaaaattctgttctctatgtgaattttggaagt |
1350907 |
T |
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