View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0980-1 (Length: 253)
Name: NF0980-1
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980-1 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 2086833 - 2086703
Alignment:
| Q |
8 |
tttaaagggttcaaattcagtttcaacaaatcgaccaataagaaagaaaagaaataccaccattttttgttggataggaaagatataccgccactaatta |
107 |
Q |
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| T |
2086833 |
tttaaagggttcaaattcagtttcaacaaatcgaccaataagaaa----agaaataccaccattttttgttggataggaaagatataccgccactaatta |
2086738 |
T |
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| Q |
108 |
caagtatctttttagactgtatgttacaagtagaa |
142 |
Q |
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| T |
2086737 |
caagtatctttttagaccgtatgttacaagtagaa |
2086703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 2086658 - 2086593
Alignment:
| Q |
187 |
gttacaactataatgtatacaaaagatgtacaatatttattttcttacaaaaatataaaagaaagat |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2086658 |
gttacaactataatgtatacaaaagatgtacaatatttattttc-tacaaaaatataaaagaaagat |
2086593 |
T |
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