View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0980-12 (Length: 546)

Name: NF0980-12
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0980-12
NF0980-12
[»] chr8 (8 HSPs)
chr8 (98-540)||(3602870-3603315)
chr8 (320-546)||(14341664-14341890)
chr8 (18-99)||(3603401-3603485)
chr8 (220-312)||(41999973-42000065)
chr8 (220-308)||(45093130-45093218)
chr8 (226-312)||(14769780-14769866)
chr8 (215-312)||(9215907-9216004)
chr8 (262-312)||(33372929-33372979)
[»] chr2 (3 HSPs)
chr2 (220-312)||(11996061-11996153)
chr2 (220-312)||(42865606-42865698)
chr2 (220-308)||(24126745-24126833)
[»] chr7 (4 HSPs)
chr7 (220-312)||(45034004-45034096)
chr7 (220-312)||(46045596-46045688)
chr7 (220-313)||(38110999-38111092)
chr7 (220-312)||(8035400-8035492)
[»] chr5 (2 HSPs)
chr5 (220-312)||(14024624-14024716)
chr5 (220-312)||(32386177-32386269)
[»] chr4 (3 HSPs)
chr4 (220-312)||(1369123-1369215)
chr4 (220-312)||(28945694-28945786)
chr4 (220-312)||(36859134-36859226)
[»] chr1 (2 HSPs)
chr1 (220-312)||(6293705-6293797)
chr1 (220-311)||(28705680-28705771)
[»] chr3 (1 HSPs)
chr3 (213-284)||(1182170-1182241)


Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 98 - 540
Target Start/End: Complemental strand, 3603315 - 3602870
Alignment:
Q  98 gatgaagatatattgatcctagaggtctccaaaatagtcgctaattcacttagtgatcgattttctccatttagtgaccaatttttcggtttctaaaacc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3603315 gatgaagatatattgatcctagaggtctccaaaatagtcgctaattcacttagtgatcgattttctccatttagtgaccaatttttcggtttctaaaact 3603216  T
Q  198 agttttcttgtagtgcctcattaaaatgaaactatatacatcggttggatgccacct---ttgattggttgagttaagctcaattgtgatgatgtttgga 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  3603215 agttttcttgtagtgcctcattaaaatgaaactatatacatcggttggatgccacctaatttgattggttgagttaagctcaattgtgatgatgtttgga 3603116  T
Q  295 aggaatttggtactcttgtgagattgaaaaatttaccattgctgtccttgtattagttctccttgttatggcaattactatcgacgatactgaggattat 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3603115 aggaatttggtactcttgtgagattgaaaaatttaccattgctgtccttgtattagttctccttgttatggcaattactatcgacggtactgaggattat 3603016  T
Q  395 tacaatgaaagttgcagtatatattatgctgaaatatgtaaaaatggtgctgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaat 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  3603015 tacaatgaaagttgcagtatatattatgctgaaatatgtaaaaatggtgttgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaac 3602916  T
Q  495 atgaaattccatgattacaagccatatttttattatattgtgggta 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3602915 atgaaattccatgattacaagccatatttttattatattgtgggta 3602870  T

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Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 320 - 546
Target Start/End: Complemental strand, 14341890 - 14341664
Alignment:
Q  320 gaaaaatttaccattgctgtccttgtattagttctccttgttatggcaattactatcgacgatactgaggattattacaatgaaagttgcagtatatatt 419  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14341890 gaaaaatttaccattgcttcccttgtattagttctccttgttatggcaattactatcgacggtactgaggattattacaatgaaagttgcagtatatatt 14341791  T
Q  420 atgctgaaatatgtaaaaatggtgctgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaatatgaaattccatgattacaagccat 519  Q
    |||||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14341790 atgctgaaatatgtaaaaatcgtgctatttgtttggaagctccttggctttgtatttgttgtgattttcaaaaacatgaaattccatgattacaagccat 14341691  T
Q  520 atttttattatattgtgggtaagtaat 546  Q
    |||||||||||||||||||||||||||    
T  14341690 atttttattatattgtgggtaagtaat 14341664  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 3603485 - 3603401
Alignment:
Q  18 atattgaggttttct---atgatgaatttcatgcctccattagtcattggaagtacctanccaataatcaagagtgctgatagga 99  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||    
T  3603485 atattgaggttttctcttatgatgaatttcatgcctccattagtcattggaagtacctacagaataatcaagagtgttgatagga 3603401  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 41999973 - 42000065
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  41999973 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 42000065  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 45093130 - 45093218
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtact 308  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||    
T  45093130 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaaggcatctggtact 45093218  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 14769780 - 14769866
Alignment:
Q  226 aaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||||||||||||||||||||||  |||| | | |||||||||||| || |||||||||| |||||| |||| || | |||||||||    
T  14769780 aaactatatacatcggttggatgagacctctaactggttgagttaaacttaattgtgatggtgtttgaaagggatctagtactcttg 14769866  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 9215907 - 9216004
Alignment:
Q  215 tcattaaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| |||| ||||||||||||| | ||||||||| |||| || ||||||| |||||| | |||||||||  ||||  ||||| || |||||||||||    
T  9215907 tcatcaaaaggaaactatatacaccagttggatgcgacctctggttggttgggttaagattaattgtgatagtgttctgaagggatctggtactcttg 9216004  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 33372929 - 33372979
Alignment:
Q  262 gttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| |||||||| |||||||||| ||||||||||| || |||||||||||    
T  33372929 gttgggttaagcttaattgtgatggtgtttggaagggatctggtactcttg 33372979  T

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Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 11996153 - 11996061
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||||||| || |||||||| ||||||||||||||    
T  11996153 aaaaggaaactatatacatcggttggatgcgacctctgattggttgggttaagcttaattgtgatggtgcttggaagggatttggtactcttg 11996061  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 42865606 - 42865698
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| ||  ||||||| || |||||||||||    
T  42865606 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcctggaagggatctggtactcttg 42865698  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 24126833 - 24126745
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtact 308  Q
    |||| ||||||||||||||||||||||||| ||||  |||| |||| |||||||| ||||| |||| || |||||||| || |||||||    
T  24126833 aaaaggaaactatatacatcggttggatgcgacctccgatttgttgggttaagcttaattgcgatggtgcttggaagggatctggtact 24126745  T

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Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 45034096 - 45034004
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| |||| |||||||||||||||||||| ||||  ||||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  45034096 aaaaggaaattatatacatcggttggatgcgacctccgattggttgggttaagcttaattgtgatggtgcttggaagggatatggtactcttg 45034004  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 46045596 - 46045688
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  46045596 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 46045688  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 313
Target Start/End: Complemental strand, 38111092 - 38110999
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttgt 313  Q
    |||| |||| |||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || ||||||||||||    
T  38111092 aaaaggaaattatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttgt 38110999  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 8035400 - 8035492
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| ||||   |||| ||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  8035400 aaaaggaaactatatacatcggttggatgcgacctccaattgcttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 8035492  T

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Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 14024624 - 14024716
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  14024624 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 14024716  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 32386177 - 32386269
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| ||||  ||||||||| |||||||| |||||||||| || ||||| || || |||||||||||    
T  32386177 aaaaggaaactatatacatcggttggatgcgacctccgattggttgggttaagcttaattgtgatggtgcttggatgggatctggtactcttg 32386269  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 1369123 - 1369215
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  1369123 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 1369215  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 28945786 - 28945694
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  28945786 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 28945694  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 36859226 - 36859134
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| |||| |||||||||||||||| ||| ||||  ||||||||  ||||||||  ||||||||| || ||| |||| || |||||||||||    
T  36859226 aaaaggaaaatatatacatcggttgggtgcgacctcagattggttaggttaagcttgattgtgatggtgcttgaaagggatctggtactcttg 36859134  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 6293705 - 6293797
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 312  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  6293705 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 6293797  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 28705680 - 28705771
Alignment:
Q  220 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactctt 311  Q
    |||| ||||||||||||||||||||| ||  ||||  ||||||||| |||||||| |||| ||||| || |||||||| || ||||||||||    
T  28705680 aaaaggaaactatatacatcggttgggtgtgacctcagattggttgggttaagcttaattttgatggtgcttggaagggatctggtactctt 28705771  T

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Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 1182170 - 1182241
Alignment:
Q  213 cctcattaaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgat 284  Q
    |||||| |||| |||||||||||||||||||| |||| |||| |||||||||| |||||||| |||||||||    
T  1182170 cctcatcaaaaggaaactatatacatcggttgaatgcgacctctgattggttgtgttaagcttaattgtgat 1182241  T

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