View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0980-15 (Length: 645)
Name: NF0980-15
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980-15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 29999689 - 29999422
Alignment:
| Q |
8 |
cttcaagtcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatctcactaacattcacaacctca |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29999689 |
cttcaagtcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctcgacaatctcactaacattcacaacctca |
29999590 |
T |
|
| Q |
108 |
ccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacgtttgaagcactaagaagtttca |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29999589 |
cctaccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacttttgaagcactaagaagtttca |
29999490 |
T |
|
| Q |
208 |
aagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29999489 |
aagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca |
29999422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 281 - 541
Target Start/End: Complemental strand, 29999138 - 29998878
Alignment:
| Q |
281 |
aaaggtatatgaaagtggagagaaggaaatagagcatagttgttgctgcaaaagacatgaccacaatggatggtttggtttggctgaagtaacgaggttg |
380 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
29999138 |
aaaggtatatgaaagtgaagagaaggaaatagagcatagttgttgctgcaaaagacatgaccacaatgaatgatttggtttggctgaagtaacgaggttg |
29999039 |
T |
|
| Q |
381 |
aagatatcaagaactccaagttggtgtacacgtttttctgtggacagagaagctacaacatatgtcaccataccaccaaggagtgctccatttatctact |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29999038 |
aagatatcaagaactccaagttggtgtacacgtttttctgtggacagagaagctacaacatatgtcaccataccaccaaggagtgctccatttatctatt |
29998939 |
T |
|
| Q |
481 |
ccttgttgaaaaggtattggttgatcacaatttttgaatacaatatttggcacacattgga |
541 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29998938 |
ccttgttgaaaaagtattggttgatcacaatttttgaatacaatatttggcacacattgga |
29998878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 30045027 - 30045294
Alignment:
| Q |
8 |
cttcaagtcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatctcactaacattcacaacctca |
107 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| || |||| ||||| ||||||||| || || ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30045027 |
cttcaagtcaaattgctcatacttactccgaccaaacatcaacttatacacaatatcttctattagattctctacaacctcactaacattcacaacctca |
30045126 |
T |
|
| Q |
108 |
ccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacgtttgaagcactaagaagtttca |
207 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
30045127 |
ccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccagacatctcaacttttgaagcactaagaagtttca |
30045226 |
T |
|
| Q |
208 |
aagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca |
275 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||| |||||| || |||||| |||||| |
|
|
| T |
30045227 |
aagtgcaaaatttcctcacactacgccaataaggaccatactcacaaaaagccatccctttggaacca |
30045294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 29990985 - 29990725
Alignment:
| Q |
8 |
cttcaagtcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatctcactaacattcacaacctca |
107 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
29990985 |
cttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataacattctctacaatctcactgacattcacaacctca |
29990886 |
T |
|
| Q |
108 |
ccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacgtttgaagcactaagaagtttca |
207 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29990885 |
cctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgacttctcaacttttgaagcactaagaagtttca |
29990786 |
T |
|
| Q |
208 |
aagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaacccttt |
268 |
Q |
| |
|
||||||| | |||| | | ||| ||||||||||| | |||| |||||| | ||||||||| |
|
|
| T |
29990785 |
aagtgcagagtttctttacactacgccaataagggtcgtacttagaaaacgccaacccttt |
29990725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 29963373 - 29963113
Alignment:
| Q |
15 |
tcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatctcactaacattcacaacctcaccttcca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29963373 |
tcaaattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaatctcactaacattcacaacctcacctacca |
29963274 |
T |
|
| Q |
115 |
aagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacgtttgaagcactaagaagtttcaaagtgca |
214 |
Q |
| |
|
|| | |||||| || | |||||||||||| ||||||||| || ||||||||||| || ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29963273 |
aaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaacatctcaacttttgaagcactaagaagtttcaaagtgca |
29963174 |
T |
|
| Q |
215 |
aaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca |
275 |
Q |
| |
|
|| |||| | | ||| |||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
29963173 |
aagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaacca |
29963113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 30011425 - 30011685
Alignment:
| Q |
15 |
tcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatctcactaacattcacaacctcaccttcca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30011425 |
tcaaattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaatctcactaacattcacaacctcacctacca |
30011524 |
T |
|
| Q |
115 |
aagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacgtttgaagcactaagaagtttcaaagtgca |
214 |
Q |
| |
|
|| | |||||| || | |||||||||||| ||||||||| || ||||||||||| || ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30011525 |
aaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaacatctcaacttttgaagcactaagaagtttcaaagtgca |
30011624 |
T |
|
| Q |
215 |
aaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca |
275 |
Q |
| |
|
|| |||| | | ||| |||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
30011625 |
aagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaacca |
30011685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 30070858 - 30071106
Alignment:
| Q |
9 |
ttcaagtcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatctcactaacattcacaacctcac |
108 |
Q |
| |
|
||||||||||||||||||||||||| || || || |||| ||||| ||||||||| || || ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
30070858 |
ttcaagtcaaattgctcatacttactccgtccaaacatcaacttatacacaatatcttctattagattctctactacctcactaacattcacaacctcac |
30070957 |
T |
|
| Q |
109 |
cttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacgtttgaagcactaagaagtttcaa |
208 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
30070958 |
caaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccagacatctcaacttttgaagcactaagaagtttcaa |
30071057 |
T |
|
| Q |
209 |
agtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaa |
257 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
30071058 |
agtgcaaaatttcctcacactacgccaataaggaccatagtcagaaaaa |
30071106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 30006126 - 30005860
Alignment:
| Q |
9 |
ttcaagtcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatctcactaacattcacaacctcac |
108 |
Q |
| |
|
|||| |||||||||||||||||||| || ||| || |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30006126 |
ttcatgtcaaattgctcatacttactccgaccaaacatcatcttatacacaatatcctcaataagattctctacaacctcactaacattcacaacctcac |
30006027 |
T |
|
| Q |
109 |
cttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacgtttgaagcactaagaagtttcaa |
208 |
Q |
| |
|
| ||||| | |||||||| ||||| ||||||||||| |||||| ||| || ||||||||||| || ||||||| ||||||||||||| ||||||||| |
|
|
| T |
30006026 |
cctccaaggcagctttctccaaagatataaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaa |
30005927 |
T |
|
| Q |
209 |
agtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca |
275 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||| |||||| |
|
|
| T |
30005926 |
agtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaacca |
30005860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 29952271 - 29952008
Alignment:
| Q |
12 |
aagtcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatctcactaacattcacaacctcacctt |
111 |
Q |
| |
|
||||||||||| |||||||| | || ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29952271 |
aagtcaaattgatcatacttgctccgacccaatatcatcttatacacaatatcctcaataagattctctacaacctcactaacattcacaacctcactca |
29952172 |
T |
|
| Q |
112 |
ccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacgtttgaagcactaagaagtttcaaagt |
211 |
Q |
| |
|
|||||| |||||||| ||| | |||| ||||||| |||||| || || ||||||| ||| || ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
29952171 |
ccaaagcagctttctccaatgacttaatcaaaacatccaacttttccttcctaatagaaccaaacatctcaacttttgaagcactaagaagttttaaagt |
29952072 |
T |
|
| Q |
212 |
gcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca |
275 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||| |||||||| ||||||||| |||||| |
|
|
| T |
29952071 |
gcaaagtttcctcacactacgccaataaggaccatacttagaaaaagccaaccctttggaacca |
29952008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 29944138 - 29943922
Alignment:
| Q |
24 |
tcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatctcactaacattcacaacctcaccttccaaagaagctt |
123 |
Q |
| |
|
|||||||||| || |||||| | |||||||| ||||||||| || |||| |||||||||| |||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
29944138 |
tcatacttactccgacccaacaccatcttatacacaatatcctctataacattctctacagcctcactaacattcacaacctcaccctccagagcagctt |
29944039 |
T |
|
| Q |
124 |
tcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcct |
223 |
Q |
| |
|
||| ||||| |||||||||||| |||||| ||| || ||||||||||| || ||||||| || ||||||||||||||||| |||| |||| ||| || |
|
|
| T |
29944038 |
tctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttcgaagcactaagaagttttgaagtacaaagttttct |
29943939 |
T |
|
| Q |
224 |
catactgcgccaataag |
240 |
Q |
| |
|
|| ||| |||||||||| |
|
|
| T |
29943938 |
cacactacgccaataag |
29943922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 30071457 - 30071501
Alignment:
| Q |
327 |
tgcaaaagacatgaccacaatggatggtttggtttggctgaagta |
371 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
30071457 |
tgcaaaagacatgtctacaatgaatggtttggtttggctgaagta |
30071501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 30005527 - 30005483
Alignment:
| Q |
327 |
tgcaaaagacatgaccacaatggatggtttggtttggctgaagta |
371 |
Q |
| |
|
||||||||||||| | |||||| ||| |||||||||||||||||| |
|
|
| T |
30005527 |
tgcaaaagacatgtctacaatgaatgctttggtttggctgaagta |
30005483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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