View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0980-17 (Length: 287)
Name: NF0980-17
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980-17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 9271676 - 9271396
Alignment:
| Q |
7 |
agaaagtctatctaatgaaatgaatttgcatacctgagtgctcctaaggtttgatcttgacttgtaggaagagagtgaagaatgcaaggcagtcaccaac |
106 |
Q |
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| T |
9271676 |
agaaagtctatctaatgaaatgaattggcatacctgagtgctcctaaggtttgatcttgacttgtaggaagagagtgaagaatgcaaggcagtcaccaac |
9271577 |
T |
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| Q |
107 |
ctttcccctactctttaggattttctccttcacaaaaggctacacactcttcttcttgcttagcaaatgtatcccacaccacaccccttttataagtacc |
206 |
Q |
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| T |
9271576 |
ctttcccctactctttaggattttctccttcacaaaaggctacacactcttcttcttgcttagcaaatgtatcccacaccacaccccttttataagtacc |
9271477 |
T |
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| Q |
207 |
ctttgcatgccccactaaacctctatctcgatcttccctagtatttgaattaaatatatattgtaatcaatatcaatatat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9271476 |
ctttgcatgccccactaaacctctatctcgatcttccctagtatttgaattaaatatatattgtaatcaatatcaatatat |
9271396 |
T |
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