View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0980-20 (Length: 695)
Name: NF0980-20
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980-20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 10 - 695
Target Start/End: Complemental strand, 48581006 - 48580308
Alignment:
| Q |
10 |
ttcatcccgcacaatagttgaaaatagatgtctacttaaaatacaaaaatgtcatcactatcatcaatgtgctggatgacacatagatccctcacaatga |
109 |
Q |
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| T |
48581006 |
ttcatcccgcacaatagttgaaaatagatgtctacttaaaatacaaaaatgtcatcactatcatcaatgtgctggatgacacatagatccctcacaatga |
48580907 |
T |
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| Q |
110 |
atacgtaaaattttatagtgcggaa--gag-at------------gagaaagaaatgagaaaaatctgaagaagatgaagtaaacatgaggtcataataa |
194 |
Q |
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| T |
48580906 |
atacgtaaaattttatagtgcggaatggagcatttaagccgtgtagaggaagaaatgagaaaaatctgaagaagatggagtaaacatgaggtcataataa |
48580807 |
T |
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| Q |
195 |
tggacaaacatcataacataggtggacaattccggtggagagacaaagttaagagcaacgtggatgcggcaagttttaaagaaaaaattgttttagtgcc |
294 |
Q |
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| T |
48580806 |
tggacaaacatcataacataggtggacaattccggtggagagacaaagttgagagcaacgtggatgaggcaagttttaaagaaaaaattgttttagtgcc |
48580707 |
T |
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| Q |
295 |
ggtatgtgtcttagagacgaaagagatgaattgatttgtgtctaaaccatgtggacaaatagttaaccaacacctcaagaagcggaagtattgagcctaa |
394 |
Q |
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| T |
48580706 |
ggtatgtgtcttagagacgaaagaggtgaattgatttgtgtttaaaccatgtggacaaatagttaaccaacacctcaagaagcggaagtattgagcctaa |
48580607 |
T |
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| Q |
395 |
gacaagcactcttattgtttatgaatttgaatttcactcaagtgatgatgataggattagatatcaagccagtggttgacggtaccacgagtaagcttac |
494 |
Q |
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| T |
48580606 |
gacaagcactcttattgtttatgaatttgaatttcactcaagtgatgatgataggattaaatttcaagctagtggttgacggcacctcgagtaagcttac |
48580507 |
T |
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| Q |
495 |
tcacaagttagaatttggtgctattttaaatgtttgtagaaaattattttgctcttcatcaaactttaggttaaattttattctgcggcaaaccaccaat |
594 |
Q |
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| T |
48580506 |
tcgcaagttagaatttggtgctattttaaatgtttgtagaaaattattttgctcttcatcaaactttaagttaaattttatccaacggcaaaccaacaat |
48580407 |
T |
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| Q |
595 |
atttcttattttttagctagagcancattgtcttatgctagtcaccacacttttgatcatattccaccatgtgtgttatgactactttgacgaattgatt |
694 |
Q |
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| T |
48580406 |
atttcttatttcttagctagagcaacattgtcttatgttagtcaccacacttttgatcatattccaaca--tgtgttatgactactttgacgaattgatt |
48580309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 577
Target Start/End: Original strand, 3138062 - 3138134
Alignment:
| Q |
505 |
gaatttggtgctattttaaatgtttgtagaaaattattttgctcttcatcaaactttaggttaaattttattc |
577 |
Q |
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| T |
3138062 |
gaatttggtgttattctaaatgtttgtaagaaatgaattttttctttatcaaactttagattaagttttattc |
3138134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 12529365 - 12529422
Alignment:
| Q |
277 |
aaaaattgttttagtgccggtatgtgtcttagagacgaaagagatgaattgatttgtg |
334 |
Q |
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| T |
12529365 |
aaaaattgttttagtgctgctatgtgtgatagaaacgaaagaggtgaattcatttgtg |
12529422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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