View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0980-4 (Length: 519)
Name: NF0980-4
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980-4 |
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| [»] chr7 (6 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 10 - 519
Target Start/End: Complemental strand, 34292149 - 34291640
Alignment:
| Q |
10 |
tctagactttgagtgtattggacttccttatctagaacatgagaaatattgcaaaatattgctcacatcacgggattaaaaagtgtgccaaaatatggga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34292149 |
tctagactttgagtgtattggacttccttatctagaacatgagaaatattgcaaaatattgctcacatcacgggatgaaaaagtgtgccaaaatatggga |
34292050 |
T |
|
| Q |
110 |
tgaaaactcaattttcaagtacctctgttgaaagaggatgaagctaggtatctgtttcgagagctgtcaggggaagttgtagatagaaaagatatcaatc |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
34292049 |
tgaaaactcaattttcaagtacctctgttgaaagaggatgaagcttggtatctgtttcgagagctgtgaggggaagttgtagatagaaatgatatcaatc |
34291950 |
T |
|
| Q |
210 |
caatagcaaaagaggttgcaaaggaatgtggtggcttaccgcttgcaattgcgacaattggaagagcactgagcaatgaagggaagtctgcatgggaaga |
309 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291949 |
caatagcaaaagaggttgcaaaggaatgtggcggcttaccgcttgcaattgcgacaattggaagagcactgagcaatgaagggaagtctgcatgggaaga |
34291850 |
T |
|
| Q |
310 |
tgcactaagacaattaaacgacgttcaatcatcttcctccttgggtgttggaaaacatatctacccccggattgagcttagtttaaagtttttgggcaat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291849 |
tgcactaagacaattaaacgacgttcaatcatcttcctccttgggtgttggaaaacatatctacccccggattgagcttagtttaaagtttttgggcaat |
34291750 |
T |
|
| Q |
410 |
aaagaacataagctcttgcttatgctttgtggattatttccagaagactttgacattcctattgaaagtttattgtatcatgcttttggcttgggattgt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291749 |
aaagaacataagctcttgcttatgctttgtggattatttccagaagactttgacattcctattgaaagtttattgtatcatgcttttggcttgggattgt |
34291650 |
T |
|
| Q |
510 |
tcaaatacat |
519 |
Q |
| |
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|||||||||| |
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| T |
34291649 |
tcaaatacat |
34291640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 504
Target Start/End: Complemental strand, 34566644 - 34566150
Alignment:
| Q |
10 |
tctagactttgagtgtattggacttccttatctagaacatgagaaatattgcaaaatattgctcacatcacgggattaaaaagtgtgccaaaatatggga |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |
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| T |
34566644 |
tctagactttgagtgtattggacttccttatctagaacatgagaaatattgcaaaatattgctcacatcacgggatgaaaaagtgtgcaaaaacttggga |
34566545 |
T |
|
| Q |
110 |
tgaaaactcaattttcaagtacctctgttgaaagaggatgaagctaggtatctgtttcgagagctgtcaggggaagttgtagatagaaaagatatcaatc |
209 |
Q |
| |
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|| || | ||||||||||| || ||||| |||||||| ||| ||||||| ||||||||| ||||||| | | ||||||||| | | |||||||| | |
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| T |
34566544 |
tgcaatgtgaattttcaagtttctgtgttgtcggaggatgaggcttggtatctatttcgagagatgtcaggtggaattgtagatacatatgatatcaacc |
34566445 |
T |
|
| Q |
210 |
caatagcaaaagaggttgcaaaggaatgtggtggcttaccgcttgcaattgcgacaattggaagagcactgagcaatgaagggaagtctgcatgggaaga |
309 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||| || |||||||||||||| |||||||| || |
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| T |
34566444 |
caatagcaagtgaggttgcaaaggaatgtggtggcttgcctcttgcaattgtgacagttggaagagcactaagtaatgaagggaagtcggcatgggagga |
34566345 |
T |
|
| Q |
310 |
tgcactaagacaattaaacgacgttcaatcatcttcctccttgggtgttggaaaacatatctacccccggattgagcttagtttaaagtttttgggcaat |
409 |
Q |
| |
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|||||| ||||| |||| | ||||||||||| ||| || | ||||||||| | |||||||| | ||||||||||||||||||||||||| || |
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| T |
34566344 |
tgcacttagacatttaagaaattttcaatcatctcccttctcagacgttggaaaatttgtctaccccagcattgagcttagtttaaagtttttggacagc |
34566245 |
T |
|
| Q |
410 |
aaagaacataagctcttgcttatgctttgtggattatttccagaagactttgacattcctattgaaagtttattgtatcatgcttttggcttggg |
504 |
Q |
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| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
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| T |
34566244 |
agagaacataagctcttccttatgctttgtggattgtatccagaagactttgacattcccattgaaagtttattgtgtcatggttttggcttggg |
34566150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 428 - 514
Target Start/End: Complemental strand, 34554552 - 34554466
Alignment:
| Q |
428 |
cttatgctttgtggattatttccagaagactttgacattcctattgaaagtttattgtatcatgcttttggcttgggattgttcaaa |
514 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| | ||| || | |||||||||||||||||| |
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| T |
34554552 |
cttatgctttgtggattgtttccggaagactttgacatacctattgaaagtttattatgtcacgcaatgggcttgggattgttcaaa |
34554466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 34371746 - 34371825
Alignment:
| Q |
200 |
gatatcaatccaatagcaaaagaggttgcaaaggaatgtggtggcttaccgcttgcaattgcgacaattggaagagcact |
279 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||| || || ||||||||||| ||| ||||| ||||||| |
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| T |
34371746 |
gatatcaatccaatagcaagtgaggttgcaagggaatgtggtggtttgccccttgcaattgcaacagttggacgagcact |
34371825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 477
Target Start/End: Original strand, 34371977 - 34372020
Alignment:
| Q |
434 |
ctttgtggattatttccagaagactttgacattcctattgaaag |
477 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
34371977 |
ctttgtggattgtttccagaggactttgacattcctatagaaag |
34372020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 34554776 - 34554723
Alignment:
| Q |
207 |
atccaatagcaaaagaggttgcaaaggaatgtggtggcttaccgcttgcaattg |
260 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| ||||| || ||||| |||| |
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| T |
34554776 |
atccaatagcaaaacaagttgcaaaggaatgtggaggcttgcctcttgctattg |
34554723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 43 - 519
Target Start/End: Complemental strand, 15896301 - 15895825
Alignment:
| Q |
43 |
agaacatgagaaatattgcaaaatattgctcacatcacgggattaaaaagtgtgccaaaatatgggatgaaaactcaattttcaagtacctctgttgaaa |
142 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| | | | ||||||||||| ||| | ||| |
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| T |
15896301 |
agaacgtgataaatattgcaaaatattgttcacatcacgggatcaaaaagtgtgccaaaatatgggatgcagagtgaattttcaagtccctgtattgtcg |
15896202 |
T |
|
| Q |
143 |
gaggatgaagctaggtatctgtttcgagagctgtcaggggaagttgtagatagaaaagatatcaatccaatagcaaaagaggttgcaaaggaatgtggtg |
242 |
Q |
| |
|
|||||||||||| || || |||| ||| || |||| || |||||| | | | | ||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
15896201 |
gaggatgaagcttggagcctatttcaagaaatggcaggagatgttgtaaacaaacatgatatcaatccaatagcaagagaggttgcaaaggcatgtggtg |
15896102 |
T |
|
| Q |
243 |
gcttaccgcttgcaattgcgacaattggaagagcactgagcaatgaagggaagtctgcatgggaagatgcactaagacaattaaacgacgttcaatcatc |
342 |
Q |
| |
|
|||| || |||||||||| |||| ||||||||||||| |||| |||||||||||||||||||||||| |||| | |||||||| | |||||||||| |
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|
| T |
15896101 |
gcttgccccttgcaattgtgacagttggaagagcactaagcattgaagggaagtctgcatgggaagacacacttaaacaattaagaaattttcaatcatc |
15896002 |
T |
|
| Q |
343 |
ttcctccttgggtgttggaaaacatatctacccccggattgagcttagtttaaagtttttgggcaataaagaacataagctcttgcttatgctttgtgga |
442 |
Q |
| |
|
|||||| | | ||||| |||| | || |||| || |||||||||||||||||||||||||| || |||||| | ||||| || ||||||||||||||| |
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|
| T |
15896001 |
ttcctcgtcagatgttgaaaaatttgtccaccctcgcattgagcttagtttaaagtttttgggaaacaaagaatacaagctattccttatgctttgtgga |
15895902 |
T |
|
| Q |
443 |
ttatttccagaagactttgacattcctattgaaagtttattgtatcatgcttttggcttgggattgttcaaatacat |
519 |
Q |
| |
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|| ||||| ||||||||||| |||||||||||| |||| ||| ||||||| | || |||||| |||||||| |||| |
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|
| T |
15895901 |
ttgtttcctgaagactttgatattcctattgaatgtttgttgcatcatgcagtgggtttgggaatgttcaaacacat |
15895825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 428 - 514
Target Start/End: Original strand, 130244 - 130330
Alignment:
| Q |
428 |
cttatgctttgtggattatttccagaagactttgacattcctattgaaagtttattgtatcatgcttttggcttgggattgttcaaa |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| | |||||||||||||||||| |
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| T |
130244 |
cttatgctttgtggattatttccagaagactttgatattcctattgaaattttattgcgtcatgcaataggcttgggattgttcaaa |
130330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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