View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0980-8 (Length: 120)

Name: NF0980-8
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0980-8
NF0980-8
[»] chr2 (1 HSPs)
chr2 (10-120)||(38125055-38125165)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 38125055 - 38125165
Alignment:
Q  10 aagtccagaaatactgttatgaaaaagaagatacagtttgcaagagaaaagcttgaaatgaaaaaagcttttatactatattaccaagtaagaggtaaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  38125055 aagtccagaaatactgttatgaaaaagaagatacagtttgcaagagaaaagcttgaaatgaaaaaagcttttatattatattaccaagtaagaagtaaac 38125154  T
Q  110 ctaattttgat 120  Q
    |||||||||||    
T  38125155 ctaattttgat 38125165  T

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