View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0980-9 (Length: 312)
Name: NF0980-9
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980-9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 26217461 - 26217246
Alignment:
| Q |
8 |
atttttgtatatacacttatcaagtacactttcaacatgttggctaatactttaaccacaactttatagagcacattacataaagctatagatgaataaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26217461 |
atttttgtatatacacttatcaagtacactttcaacatgttggctaatactttaaccacaactttatagagcacattacataaagctatagatgaataaa |
26217362 |
T |
|
| Q |
108 |
cctctcctatagggattagatcaatgtttgttgagcttgtaattaggctaggaggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26217361 |
cctctcctatagggattagatcaatgtttgttgagtttgtaattaggctaggaggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatg |
26217262 |
T |
|
| Q |
208 |
atgaccacaatttttc |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26217261 |
atgaccacaatttttc |
26217246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 26217187 - 26217095
Alignment:
| Q |
220 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcagcaaatagaaactcattatccatactagtgaatagtgatagatggat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26217187 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggat |
26217095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University