View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0980_high_1 (Length: 473)

Name: NF0980_high_1
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0980_high_1
NF0980_high_1
[»] chr4 (2 HSPs)
chr4 (72-447)||(25739845-25740222)
chr4 (216-396)||(25743461-25743638)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 72 - 447
Target Start/End: Complemental strand, 25740222 - 25739845
Alignment:
Q  72 gacaaatgtattattcgaaaatataagtcataaaacagtggcaattcaacacgtannnnnnnacagtgataaattaacctttttgttgggacaaagacaa 171  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  25740222 gacaaatgtattattcgaagatataagtcataaaacagtggcaattcaacacg--gttttttacagtgataaattaacctttttgttgggacaaagacaa 25740125  T
Q  172 aaacaaagacagtgacaagaattcaagactaaccactnnnnnnncaacatgataacaaccgacttcgtcatgagaataagctggctctcctaccctacca 271  Q
    | |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25740124 agacaaagacagtgacaagaattcaagactaaccactaaaaaaacaacatgataacaaccgacttcgtcatgagaataagctggctctcctaccctacca 25740025  T
Q  272 ttaatattaatatcttgtctagaaatggatcttctccacatactaagatctattgtccacttgtttcttttaaaggaaatatatactatagtctatagga 371  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25740024 ttaatattaatatcttgtcaagaaatggatcttctccacatactaagatctattgtcgacttgtttcttttaaaggaaatatatactatagtctatagga 25739925  T
Q  372 gtaaatactttttctatgatatcaaagaggaaatatactttagacatgccag----gtgatataacttaatatatatttt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  25739924 gtaaatactttttctatgatatcaaagaggaaatatactttagacatgccagagatgtgatataacttaatatatatttt 25739845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 216 - 396
Target Start/End: Complemental strand, 25743638 - 25743461
Alignment:
Q  216 caacatgataacaaccgacttcgtcatgagaataagctggctctcctaccctaccattaatattaatatct---tgtctagaaatggatcttctccacat 312  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||    
T  25743638 caacatgataactaccaactttgtcatgagaataagctggctctcctaccctaccattaatattaatatcttgctgtcaagaaatggatcttctccacat 25743539  T
Q  313 actaagatctattgtccacttgtttcttttaaag-gaaatatatactatagtctataggagtaaatactttttctatgatatcaa 396  Q
    |||||||||||||||||| |||||||||||||||  |||||||||       ||||||||||| |||||||||||||||||||||    
T  25743538 actaagatctattgtccatttgtttcttttaaagaaaaatatata-------ctataggagtatatactttttctatgatatcaa 25743461  T

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