View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0980_low_1 (Length: 776)
Name: NF0980_low_1
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 30 - 625
Target Start/End: Complemental strand, 32680233 - 32679640
Alignment:
| Q |
30 |
tgtagtgctttggtttacattgtcagatactccctctgatccttttaataagagacaaatgagtcaatcagagttttcctcgatccacgattgacaacat |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32680233 |
tgtagtgctttggtttacattgtcagatactccctctaatccttttaataggagacaaatgagtcaatcagagttttcctcgatccacgattgacaacat |
32680134 |
T |
|
| Q |
130 |
aggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgcttttttggcttgttgatatcatgtttcg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32680133 |
aggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgcttttttggcttgttgatatcatgtttcg |
32680034 |
T |
|
| Q |
230 |
acctgctgttacttggttgtattagttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgtgtgtgtttaacagc |
329 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32680033 |
acctactgttacttggttgtattagttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgtgtgt--ttaacagc |
32679936 |
T |
|
| Q |
330 |
gagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttgaactgt |
429 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32679935 |
gagagtttgtatgaagacgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatataaggtattataattccgctcattatttgaactgt |
32679836 |
T |
|
| Q |
430 |
catgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttga |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
32679835 |
catgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttaggatgtgttttacatgatatttaa |
32679736 |
T |
|
| Q |
530 |
gataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32679735 |
gataacaaacaagtattgttggttttcatcctttatgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct |
32679640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 599
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
| Q |
552 |
ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt |
599 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32679676 |
ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt |
32679630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 4e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 112 - 535
Target Start/End: Original strand, 44806374 - 44806795
Alignment:
| Q |
112 |
atccacgattgacaacataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgcttttttggct |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||| ||||||| ||| ||||||| || |
|
|
| T |
44806374 |
atccactattgacaacataggttttgaaagcttctgaattaagggaatttatacgaaatcattaagacttttccttgtagcatcgtgtccttttttcact |
44806473 |
T |
|
| Q |
212 |
tgttgatatcatgtttcgacctgctgttacttggttgtattagttttttagtgtgaact-gccagaatgggaatgtt---gaagattaaacatgcgtgtt |
307 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||||||||||||||| || | | | ||||| |||||| | | ||||||||| ||||| |
|
|
| T |
44806474 |
cgttgatatcatgtttctttct-----tacttggttgaattagttttttagtgttaatttgtcggaatgaaaatgtttttggggtttaaacatgtgtgtt |
44806568 |
T |
|
| Q |
308 |
ttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataa |
407 |
Q |
| |
|
| ||| ||| || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||| || ||| ||||||||| |||||| | || |
|
|
| T |
44806569 |
tcttattcatgttttgaacagtgagagtttgtacgaagatgaggagtttgatcagcatcaaaggcaacttgccgcattacttgtatcaaaggtagtgta- |
44806667 |
T |
|
| Q |
408 |
ttccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatg |
507 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
44806668 |
ttctgctcattatttgaattgtcacatgttctattgataactgtgcgatgctgtttttgcacatacggagtctctttcgtcaagtagctaagctgttatg |
44806767 |
T |
|
| Q |
508 |
atgtgttttacatgatatttgagataac |
535 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
44806768 |
atgtgttttacatgatatttgagataac |
44806795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 672 - 762
Target Start/End: Original strand, 44806913 - 44807003
Alignment:
| Q |
672 |
tggtttgtgttttggcatctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc |
762 |
Q |
| |
|
|||||||| |||| | |||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
44806913 |
tggtttgtattttagtatctgatttttcttcgctcctttatcttaggtcttttattacttgggcgagttgaatgactcactatcctatgcc |
44807003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 590 - 657
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
| Q |
590 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca |
657 |
Q |
| |
|
|||||| |||| || ||||||| | |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
44806806 |
tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca |
44806873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 293 - 563
Target Start/End: Complemental strand, 28136291 - 28136025
Alignment:
| Q |
293 |
ttaaacatgcgtgttttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgta |
392 |
Q |
| |
|
||||||||| ||| ||||||||| |||||| || || ||||||||||| ||||| |||| |||||||| ||||||||||||| || |||||||| ||| |
|
|
| T |
28136291 |
ttaaacatgtgtggtttgtatgtatgtgttaaatagtgagagtttgtacgaagaggaggcctttgatcagcaccaaaggcaacttgccgcactactcgta |
28136192 |
T |
|
| Q |
393 |
tagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgct-atttttgcatatatggagtctctttcttcatg |
491 |
Q |
| |
|
| |||||| ||| ||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28136191 |
tccaaggtagtattgttctgctcattatttgaactgtcacatgttctattggtgactatgcgatgctgttttttgcatatatggagtctctttcttcatg |
28136092 |
T |
|
| Q |
492 |
tagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatccttt |
563 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
28136091 |
t-----agctgttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt |
28136025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 672 - 762
Target Start/End: Complemental strand, 28135930 - 28135839
Alignment:
| Q |
672 |
tggtttgtgttttggc-atctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc |
762 |
Q |
| |
|
||||||||||||| | |||| ||||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
28135930 |
tggtttgtgtttttactatctaattttttttcgctcctttatcttaggtattttattacttgggtgagctgaatgactcactatcctatgcc |
28135839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 670
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
| Q |
590 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
670 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||| |||||| ||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
28136035 |
tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc |
28135955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 422 - 588
Target Start/End: Original strand, 2230444 - 2230609
Alignment:
| Q |
422 |
tgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatg |
521 |
Q |
| |
|
|||||||||| ||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2230444 |
tgaactgtcacatgttctattgataaccgagcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatg |
2230543 |
T |
|
| Q |
522 |
atatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaacc |
588 |
Q |
| |
|
|||||||||||| |||| || |||| | || |||||||||| | | ||||||||| |||||||||| |
|
|
| T |
2230544 |
atatttgagatagcaaataaatattttcggccttcatccttt-ttgattgtacctggcttctaaacc |
2230609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 591 - 670
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
| Q |
591 |
ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
670 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
2230576 |
ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc |
2230655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 694 - 762
Target Start/End: Original strand, 2230704 - 2230772
Alignment:
| Q |
694 |
ttttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc |
762 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2230704 |
ttttttttcgctcctttatcttaggtctttaattacttgggcgagctgaatgactcactatcctatgcc |
2230772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University