View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0980_low_2 (Length: 473)
Name: NF0980_low_2
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 72 - 447
Target Start/End: Complemental strand, 25740222 - 25739845
Alignment:
| Q |
72 |
gacaaatgtattattcgaaaatataagtcataaaacagtggcaattcaacacgtannnnnnnacagtgataaattaacctttttgttgggacaaagacaa |
171 |
Q |
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| T |
25740222 |
gacaaatgtattattcgaagatataagtcataaaacagtggcaattcaacacg--gttttttacagtgataaattaacctttttgttgggacaaagacaa |
25740125 |
T |
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| Q |
172 |
aaacaaagacagtgacaagaattcaagactaaccactnnnnnnncaacatgataacaaccgacttcgtcatgagaataagctggctctcctaccctacca |
271 |
Q |
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| T |
25740124 |
agacaaagacagtgacaagaattcaagactaaccactaaaaaaacaacatgataacaaccgacttcgtcatgagaataagctggctctcctaccctacca |
25740025 |
T |
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| Q |
272 |
ttaatattaatatcttgtctagaaatggatcttctccacatactaagatctattgtccacttgtttcttttaaaggaaatatatactatagtctatagga |
371 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740024 |
ttaatattaatatcttgtcaagaaatggatcttctccacatactaagatctattgtcgacttgtttcttttaaaggaaatatatactatagtctatagga |
25739925 |
T |
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| Q |
372 |
gtaaatactttttctatgatatcaaagaggaaatatactttagacatgccag----gtgatataacttaatatatatttt |
447 |
Q |
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| T |
25739924 |
gtaaatactttttctatgatatcaaagaggaaatatactttagacatgccagagatgtgatataacttaatatatatttt |
25739845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 216 - 396
Target Start/End: Complemental strand, 25743638 - 25743461
Alignment:
| Q |
216 |
caacatgataacaaccgacttcgtcatgagaataagctggctctcctaccctaccattaatattaatatct---tgtctagaaatggatcttctccacat |
312 |
Q |
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|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
25743638 |
caacatgataactaccaactttgtcatgagaataagctggctctcctaccctaccattaatattaatatcttgctgtcaagaaatggatcttctccacat |
25743539 |
T |
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| Q |
313 |
actaagatctattgtccacttgtttcttttaaag-gaaatatatactatagtctataggagtaaatactttttctatgatatcaa |
396 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
25743538 |
actaagatctattgtccatttgtttcttttaaagaaaaatatata-------ctataggagtatatactttttctatgatatcaa |
25743461 |
T |
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