View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0980_low_4 (Length: 315)

Name: NF0980_low_4
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0980_low_4
NF0980_low_4
[»] chr2 (26 HSPs)
chr2 (31-311)||(45235330-45235609)
chr2 (214-313)||(14523455-14523552)
chr2 (214-313)||(7494921-7495019)
chr2 (214-313)||(17695261-17695360)
chr2 (218-313)||(5272222-5272314)
chr2 (214-258)||(9458401-9458445)
chr2 (214-258)||(16463620-16463664)
chr2 (214-258)||(25637413-25637457)
chr2 (214-258)||(34120573-34120617)
chr2 (214-258)||(34120657-34120701)
chr2 (214-313)||(11742611-11742709)
chr2 (214-313)||(35313820-35313917)
chr2 (214-313)||(36354526-36354622)
chr2 (214-313)||(37322362-37322458)
chr2 (213-255)||(34451471-34451513)
chr2 (214-255)||(39785518-39785559)
chr2 (214-258)||(3323408-3323452)
chr2 (214-258)||(5789783-5789827)
chr2 (214-258)||(36794217-36794261)
chr2 (218-258)||(43410363-43410403)
chr2 (219-257)||(8928547-8928585)
chr2 (282-315)||(45464021-45464054)
chr2 (214-254)||(7491088-7491128)
chr2 (269-313)||(8947135-8947179)
chr2 (218-258)||(19444083-19444123)
chr2 (277-313)||(39329746-39329782)
[»] chr5 (20 HSPs)
chr5 (214-315)||(6315858-6315957)
chr5 (217-311)||(19929882-19929974)
chr5 (214-254)||(6753962-6754002)
chr5 (216-313)||(6753741-6753836)
chr5 (214-258)||(1248740-1248784)
chr5 (214-258)||(4818483-4818527)
chr5 (214-258)||(6616016-6616060)
chr5 (214-258)||(41496013-41496057)
chr5 (214-313)||(40899851-40899948)
chr5 (216-258)||(40530361-40530403)
chr5 (214-315)||(3348211-3348310)
chr5 (214-258)||(15818618-15818662)
chr5 (214-258)||(41062295-41062339)
chr5 (214-257)||(2588200-2588243)
chr5 (216-258)||(9515668-9515710)
chr5 (216-258)||(29374128-29374170)
chr5 (269-313)||(7828009-7828053)
chr5 (275-315)||(10851180-10851220)
chr5 (214-254)||(27580539-27580579)
chr5 (3-31)||(29374368-29374396)
[»] chr3 (35 HSPs)
chr3 (214-315)||(10366732-10366831)
chr3 (214-313)||(36476517-36476614)
chr3 (214-258)||(37497424-37497468)
chr3 (214-258)||(43254002-43254046)
chr3 (214-258)||(44301494-44301538)
chr3 (214-299)||(34957437-34957519)
chr3 (214-258)||(27471268-27471312)
chr3 (214-258)||(30710582-30710626)
chr3 (226-313)||(37695751-37695837)
chr3 (214-257)||(37773105-37773148)
chr3 (219-258)||(39043893-39043932)
chr3 (268-314)||(5323021-5323067)
chr3 (216-312)||(38137532-38137626)
chr3 (214-254)||(38795277-38795317)
chr3 (214-258)||(43715239-43715283)
chr3 (214-254)||(45710782-45710822)
chr3 (214-311)||(19822944-19823039)
chr3 (218-313)||(37311886-37311980)
chr3 (214-257)||(37804671-37804714)
chr3 (214-257)||(53560149-53560192)
chr3 (216-257)||(24569235-24569276)
chr3 (218-315)||(41038476-41038571)
chr3 (214-258)||(1778318-1778362)
chr3 (275-315)||(26467101-26467141)
chr3 (218-258)||(27549424-27549464)
chr3 (214-258)||(30190798-30190842)
chr3 (214-258)||(36460554-36460598)
chr3 (218-258)||(37741532-37741572)
chr3 (3-31)||(39043818-39043846)
chr3 (213-257)||(40462253-40462297)
chr3 (218-258)||(48541130-48541170)
chr3 (275-311)||(49447878-49447914)
chr3 (214-258)||(51065151-51065195)
chr3 (214-258)||(51838098-51838142)
chr3 (214-258)||(54726418-54726462)
[»] chr8 (31 HSPs)
chr8 (214-313)||(13335150-13335246)
chr8 (214-313)||(9300199-9300298)
chr8 (214-258)||(22771974-22772018)
chr8 (218-258)||(396750-396790)
chr8 (214-313)||(5053239-5053335)
chr8 (218-258)||(10180086-10180126)
chr8 (214-258)||(10953871-10953915)
chr8 (214-258)||(10961876-10961920)
chr8 (214-258)||(17719397-17719441)
chr8 (218-257)||(21216240-21216279)
chr8 (214-253)||(40996505-40996544)
chr8 (220-258)||(1875878-1875916)
chr8 (214-315)||(32476221-32476319)
chr8 (214-299)||(26626212-26626295)
chr8 (218-258)||(31231667-31231707)
chr8 (214-258)||(34948824-34948868)
chr8 (214-258)||(39482545-39482589)
chr8 (213-256)||(25285098-25285141)
chr8 (214-257)||(36007029-36007072)
chr8 (1-31)||(14854994-14855024)
chr8 (216-258)||(29226666-29226708)
chr8 (216-258)||(39405697-39405739)
chr8 (214-248)||(44761641-44761675)
chr8 (216-258)||(45425806-45425848)
chr8 (218-258)||(50753-50793)
chr8 (214-258)||(2767436-2767480)
chr8 (214-258)||(10098131-10098175)
chr8 (214-258)||(17823855-17823899)
chr8 (218-258)||(32678353-32678393)
chr8 (218-258)||(34394097-34394137)
chr8 (214-258)||(39466176-39466220)
[»] chr7 (33 HSPs)
chr7 (214-313)||(21390234-21390332)
chr7 (214-313)||(759183-759280)
chr7 (214-313)||(34947440-34947537)
chr7 (214-258)||(25571360-25571404)
chr7 (214-258)||(37245630-37245674)
chr7 (214-258)||(40076258-40076302)
chr7 (214-313)||(83324-83422)
chr7 (214-313)||(21350717-21350815)
chr7 (214-300)||(36790678-36790764)
chr7 (214-258)||(19271877-19271921)
chr7 (214-258)||(21760129-21760173)
chr7 (214-258)||(42935598-42935642)
chr7 (216-258)||(33819154-33819196)
chr7 (213-258)||(24166929-24166974)
chr7 (213-250)||(47045618-47045655)
chr7 (214-258)||(23670425-23670469)
chr7 (214-258)||(27920926-27920970)
chr7 (214-258)||(28103670-28103714)
chr7 (214-258)||(28202454-28202498)
chr7 (214-258)||(31930647-31930691)
chr7 (218-258)||(34100692-34100732)
chr7 (214-258)||(43873863-43873907)
chr7 (216-258)||(2459413-2459455)
chr7 (1-31)||(3178270-3178300)
chr7 (216-258)||(7457565-7457607)
chr7 (214-252)||(21760321-21760359)
chr7 (268-313)||(3178296-3178341)
chr7 (214-258)||(9785928-9785972)
chr7 (214-258)||(11373573-11373617)
chr7 (214-258)||(24516434-24516478)
chr7 (269-313)||(30865960-30866004)
chr7 (218-258)||(37490319-37490359)
chr7 (214-258)||(44424085-44424129)
[»] chr4 (37 HSPs)
chr4 (214-311)||(28500976-28501073)
chr4 (216-313)||(49746895-49746991)
chr4 (214-258)||(35380478-35380522)
chr4 (214-258)||(35311369-35311413)
chr4 (214-258)||(52859938-52859982)
chr4 (214-312)||(38405194-38405291)
chr4 (214-258)||(11907743-11907787)
chr4 (214-258)||(22129975-22130019)
chr4 (214-258)||(25233115-25233159)
chr4 (214-313)||(33790822-33790921)
chr4 (214-258)||(42617047-42617091)
chr4 (214-258)||(47773163-47773207)
chr4 (214-258)||(49176079-49176123)
chr4 (214-257)||(26147763-26147806)
chr4 (214-313)||(21240795-21240888)
chr4 (213-258)||(47359115-47359160)
chr4 (214-258)||(2066724-2066768)
chr4 (214-258)||(4972506-4972550)
chr4 (214-258)||(5841572-5841616)
chr4 (218-258)||(16821476-16821516)
chr4 (218-258)||(40122999-40123039)
chr4 (214-258)||(51624719-51624763)
chr4 (218-313)||(2653357-2653450)
chr4 (214-313)||(49428433-49428529)
chr4 (216-257)||(5618483-5618524)
chr4 (275-312)||(25142471-25142508)
chr4 (216-257)||(52868908-52868949)
chr4 (214-258)||(3098415-3098459)
chr4 (214-258)||(7061808-7061852)
chr4 (214-258)||(10754307-10754351)
chr4 (214-258)||(10968076-10968120)
chr4 (219-255)||(19265744-19265780)
chr4 (218-258)||(21698653-21698693)
chr4 (269-313)||(35251885-35251929)
chr4 (218-258)||(42517790-42517830)
chr4 (269-313)||(54506774-54506818)
chr4 (213-245)||(54921772-54921804)
[»] chr1 (37 HSPs)
chr1 (214-313)||(6785189-6785286)
chr1 (214-258)||(23169132-23169176)
chr1 (215-313)||(39864045-39864141)
chr1 (214-258)||(12039015-12039059)
chr1 (214-258)||(20209981-20210025)
chr1 (214-258)||(24991795-24991839)
chr1 (214-258)||(35367735-35367779)
chr1 (214-258)||(37506057-37506101)
chr1 (214-258)||(49224127-49224171)
chr1 (214-253)||(4659710-4659749)
chr1 (216-258)||(12151123-12151165)
chr1 (216-258)||(40144988-40145030)
chr1 (214-251)||(10495772-10495809)
chr1 (214-299)||(33733364-33733447)
chr1 (268-313)||(38787326-38787371)
chr1 (218-258)||(3312056-3312096)
chr1 (214-313)||(16395134-16395230)
chr1 (214-258)||(26256229-26256273)
chr1 (214-258)||(41121964-41122008)
chr1 (214-258)||(43500881-43500925)
chr1 (218-258)||(45331276-45331316)
chr1 (218-258)||(52429279-52429319)
chr1 (268-315)||(25089172-25089219)
chr1 (218-257)||(29074817-29074856)
chr1 (214-257)||(45775445-45775488)
chr1 (214-256)||(6160593-6160635)
chr1 (216-258)||(28748926-28748968)
chr1 (216-254)||(37275536-37275574)
chr1 (269-311)||(37276447-37276489)
chr1 (214-252)||(52837216-52837254)
chr1 (218-313)||(13579709-13579801)
chr1 (214-255)||(15699073-15699114)
chr1 (280-313)||(37539124-37539157)
chr1 (214-258)||(17988886-17988930)
chr1 (214-258)||(21910149-21910193)
chr1 (218-254)||(30437741-30437777)
chr1 (214-258)||(31042730-31042774)
[»] scaffold0003 (1 HSPs)
scaffold0003 (214-258)||(252941-252985)
[»] chr6 (25 HSPs)
chr6 (214-258)||(6801863-6801907)
chr6 (214-313)||(21010104-21010203)
chr6 (216-315)||(21425639-21425738)
chr6 (214-311)||(29363237-29363334)
chr6 (218-258)||(15058055-15058095)
chr6 (214-258)||(21478232-21478276)
chr6 (214-258)||(27367236-27367280)
chr6 (214-258)||(27457583-27457627)
chr6 (214-258)||(30716832-30716876)
chr6 (214-313)||(11656030-11656128)
chr6 (214-256)||(23142601-23142643)
chr6 (216-258)||(23397754-23397796)
chr6 (214-310)||(31283488-31283576)
chr6 (214-258)||(5302284-5302328)
chr6 (214-258)||(13207229-13207273)
chr6 (215-298)||(27367524-27367607)
chr6 (215-298)||(27457871-27457954)
chr6 (215-258)||(181491-181533)
chr6 (214-257)||(7920174-7920217)
chr6 (224-258)||(1956116-1956150)
chr6 (218-315)||(34299931-34300027)
chr6 (214-254)||(1781738-1781778)
chr6 (214-258)||(11143723-11143767)
chr6 (214-258)||(12307731-12307775)
chr6 (214-258)||(34657702-34657746)
[»] scaffold0328 (1 HSPs)
scaffold0328 (214-258)||(8120-8164)
[»] scaffold0159 (1 HSPs)
scaffold0159 (214-258)||(34156-34200)
[»] scaffold0110 (1 HSPs)
scaffold0110 (218-258)||(1493-1533)
[»] scaffold0011 (1 HSPs)
scaffold0011 (282-313)||(14253-14284)
[»] scaffold1809 (1 HSPs)
scaffold1809 (215-253)||(826-864)
[»] scaffold0095 (2 HSPs)
scaffold0095 (216-258)||(50139-50181)
scaffold0095 (214-258)||(22281-22325)
[»] scaffold0330 (1 HSPs)
scaffold0330 (214-258)||(5325-5369)
[»] scaffold0294 (1 HSPs)
scaffold0294 (214-254)||(16972-17012)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 31 - 311
Target Start/End: Original strand, 45235330 - 45235609
Alignment:
Q  31 gcatagggtgggaaaagcaatagtcttcgaaaaattcatataggtcctaccactttaggtgacacttattcgactataaggtgacacttattcccaatat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45235330 gcatagggtgggaaaagcaatagtcttcgaaaaattcatataggtcctaccactttaggtgacacttattcgactataaggtgacacttattcccaatat 45235429  T
Q  131 agtcgagcctgcatggatttcaccaattagaagatgtttccttcgtctcacaatatttgtctctttaacattgnnnnnnnnnatctcaaaataattgtca 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||          ||||||||||||||||||    
T  45235430 agtcgagcctgcatggatttcaccaattagaagatgtttccttcgtctcacaatatttgtctctttaaaatt-tgtttttctatctcaaaataattgtca 45235528  T
Q  231 ctttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaacta 311  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||| |||||||    
T  45235529 ctttataataccaatgcaacatttattattatttttttcattactatatccttatttattgaatttcatcaaacttaacta 45235609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 14523552 - 14523455
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||| |||||||||||||||||         |||||| |||||||||||| ||||||||||||| || |||||||||    
T  14523552 tctcaaaataattgtcactttagaatatcaatgcaacatttatta--ttattttccattattatatccttattaattgaatttcatctaacttaactact 14523455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 7495019 - 7494921
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||||||||||| |||||||||          ||||| |||| ||||||||||||||||||||| || |||||||||    
T  7495019 tctcaaaataattgtcactttagaataccaatgcagcatttattattttttttt-cattattatacccttatttattgaatttcatccaacttaactact 7494921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 17695261 - 17695360
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||         ||| || |||| ||||||||||||||||||||| || |||||||||    
T  17695261 tctcaaaataattgtcactttagaatatcaatgcagcatttattattattttttccactattatacccttatttattgaatttcatccaacttaactact 17695360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 313
Target Start/End: Complemental strand, 5272314 - 5272222
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||| ||||| ||||||||||||||||         |||||| |||| ||||||||||||||||||||| ||||||| ||||    
T  5272314 aaaataattgtcactttagaatacaaatgcaacatttatta---tttttcccattattatacccttatttattgaatttcatccaatttaattact 5272222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 9458445 - 9458401
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  9458445 tctcaaaataattgtcactttagaataccaatgcagcatttatta 9458401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 16463620 - 16463664
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  16463620 tctcaaaataattgtcactttagaataccaatgcagcatttatta 16463664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 25637413 - 25637457
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  25637413 tctcaaaataattgtcactttagaataccaatgcagcatttatta 25637457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 34120617 - 34120573
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  34120617 tctcaaaataattgtcactttaaaataccaatgcagcatttatta 34120573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 34120701 - 34120657
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  34120701 tctcaaaataattgtcactttaaaataccaatgcagcatttatta 34120657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 11742709 - 11742611
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||         |||| || ||| |||||||||||||| ||||||||| |||||||||    
T  11742709 tctcaaaataattgtcactttagaatacgaatgaaacatttatta-ttttttttccatgacaatacccttatttattgaacttcatcaaacttaactact 11742611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 35313820 - 35313917
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||         ||| || ||||  ||||||||||||||||||||||| |||||||||    
T  35313820 tctcaaaataattgtcactttacaataataatgcaacatttatta--cttttttccactattatactcttatttattgaatttcatcaaacttaactact 35313917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 36354622 - 36354526
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||         |||||| |||| | ||||||||||||||||||| || |||||||||    
T  36354622 tctcaaaataattgtcactttagaataccaatgcagaatttatta---ttttttccattattataccattatttattgaatttcatccaacttaactact 36354526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 37322362 - 37322458
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||||| ||| | |||||||||         |||||| |||| ||||||||||||||||||||| || |||||||||    
T  37322362 tctcaaaataattgtcactttagaatacctatgtagcatttattatttttt---ccattattatacccttatttattgaatttcatctaacttaactact 37322458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 34451513 - 34451471
Alignment:
Q  213 atctcaaaataattgtcactttataataccaatgcaacattta 255  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  34451513 atctcaaaataattgtcactttagaatatcaatgcaacattta 34451471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 39785518 - 39785559
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacattta 255  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  39785518 tctcaaaataattgtcactttagaataccaatgcagcattta 39785559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 3323452 - 3323408
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||    
T  3323452 tctcaaaataattctcactttacaataccaatgcagcatttatta 3323408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 5789827 - 5789783
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||    
T  5789827 tctcaaaataattgtcactttacaatatcaatgcatcatttatta 5789783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 36794217 - 36794261
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||    
T  36794217 tctcaaaataattatcactttaaaataccaatgcagcatttatta 36794261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 43410363 - 43410403
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  43410363 aaaataattgtcactttagaatactaatgcaacatttatta 43410403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 8928547 - 8928585
Alignment:
Q  219 aaataattgtcactttataataccaatgcaacatttatt 257  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  8928547 aaataattgtcactttataataccaatgcagtatttatt 8928585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 45464021 - 45464054
Alignment:
Q  282 ttatttattgaatttcatcaaatttaactacttc 315  Q
    ||||||||||||||||||| ||||||||||||||    
T  45464021 ttatttattgaatttcatctaatttaactacttc 45464054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 7491088 - 7491128
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacattt 254  Q
    |||||||||||||||||||||| |||| ||||| |||||||    
T  7491088 tctcaaaataattgtcactttaaaatatcaatgaaacattt 7491128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 8947179 - 8947135
Alignment:
Q  269 cattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||| |||| ||||||||||||||||||||| || |||||||||    
T  8947179 cattattatacccttatttattgaatttcatccaacttaactact 8947135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 19444083 - 19444123
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||| | |||| |||||||||||||||||    
T  19444083 aaaataattgtcacttcaaaatatcaatgcaacatttatta 19444123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 39329782 - 39329746
Alignment:
Q  277 tatccttatttattgaatttcatcaaatttaactact 313  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  39329782 tatcgttatttattgaatttcatccaatttaactact 39329746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 6315957 - 6315858
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| ||||||||||||||||||||||         |||||| |||| ||||||||||||||||||||| || |||||||||    
T  6315957 tctcaaaataattgtcactttagaataccaatgcaacatttatta--ttattttccattattatacccttatttattgaatttcatccaacttaactact 6315860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 19929882 - 19929974
Alignment:
Q  217 caaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaacta 311  Q
    ||||||||||||||||||| ||||||||||||||||||||||         |||||| |||| ||||||||||||||||||||| || |||||||    
T  19929882 caaaataattgtcactttagaataccaatgcaacatttatta--ttattttccattattatacccttatttattgaatttcatccaacttaacta 19929974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 6753962 - 6754002
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacattt 254  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6753962 tctcaaaataattgtcactttataataccaatgcaacattt 6754002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 6753836 - 6753741
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||||||||| |||||||| ||||||||||||||||||||||         |||||| |||| ||||||||||| ||||||||| || |||||||||    
T  6753836 tcaaaataattatcactttagaataccaatgcaacatttatta--tctttttccattattatacccttatttattaaatttcatccaacttaactact 6753741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 1248784 - 1248740
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  1248784 tctcaaaataattgtcactttagaatatcaatgcaacatttatta 1248740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 4818483 - 4818527
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||||||||||||| | |||||||||    
T  4818483 tctcaaaataattgtcactttataataccaatgtagcatttatta 4818527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 6616060 - 6616016
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||| |||||||||||||||    
T  6616060 tctcaaaataattgtcactttacaatacctatgcaacatttatta 6616016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 41496013 - 41496057
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  41496013 tctcaaaataattgtcactttacaatactaatgcaacatttatta 41496057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 40899851 - 40899948
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||| || |||| |||||||||         |||||| |||| ||||||||||||||||||||| || |||||||||    
T  40899851 tctcaaaataattgtcactttagaataacattgcagcatttattattatttt--ccattattatacccttatttattgaatttcatctaacttaactact 40899948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 40530403 - 40530361
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  40530403 tcaaaataattgtcactttacaataccaatgcagcatttatta 40530361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 3348310 - 3348211
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||         ||||||  |||||||||||||||||| |||||| || |||| ||||    
T  3348310 tctcaaaataattgtcattttagaataccaatgcagcatttatta--tttttttccattataatatccttatttattgaacttcatccaacttaattact 3348213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 15818662 - 15818618
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||    
T  15818662 tctcaaaataactgtcactttacaataccaatgcaacattaatta 15818618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 41062339 - 41062295
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||    
T  41062339 tctcaaaataattataactttagaataccaatgcaacatttatta 41062295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 2588243 - 2588200
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||    
T  2588243 tctcaaaataattgtcactttagaatatcaatgcagcatttatt 2588200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 9515668 - 9515710
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||| ||||| |||||| |||||||||    
T  9515668 tcaaaataattgtcactttacaatactaatgcatcatttatta 9515710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 29374128 - 29374170
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||| |||||||| |||| |||||||||||||||||    
T  29374128 tcaaaataattatcactttacaatatcaatgcaacatttatta 29374170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 7828053 - 7828009
Alignment:
Q  269 cattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||| |||||||||||||||| ||||||||| || |||||||||    
T  7828053 cattattatatccttatttattaaatttcatccaacttaactact 7828009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 10851180 - 10851220
Alignment:
Q  275 tatatccttatttattgaatttcatcaaatttaactacttc 315  Q
    |||| ||||||||||||| |||||| |||||||||||||||    
T  10851180 tatacccttatttattgattttcataaaatttaactacttc 10851220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 27580539 - 27580579
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacattt 254  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  27580539 tctcaaaataattgtcactttacataaccaatgcaacattt 27580579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 29374396 - 29374368
Alignment:
Q  3 acctttattaattgtagttagtggagtag 31  Q
    |||||||||||||||||||||||||||||    
T  29374396 acctttattaattgtagttagtggagtag 29374368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 10366831 - 10366732
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| ||||||||||||||||||||||         |||||| |||| ||||||||||||||||||||| || |||||||||    
T  10366831 tctcaaaataattgtcactttagaataccaatgcaacatttatta--ttttttcccattattatacccttatttattgaatttcatccaacttaactact 10366734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 36476517 - 36476614
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||||||||||| |||||||||         | |||| |||| |||||||||||||||||||||||| |||||||||    
T  36476517 tctcaaaataattgtcactttagaataccaatgcagcatttatta--cttttttctattattatacccttatttattgaatttcatcaaacttaactact 36476614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 37497424 - 37497468
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  37497424 tctcaaaataattgtcactttataataccaatacaacatttatta 37497468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 43254046 - 43254002
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  43254046 tctcaaaataattgtcactttacaataccaatgcaacatttatta 43254002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 44301494 - 44301538
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  44301494 tctcaaaataattgtcactttataatatcaatgcaacatttatta 44301538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 34957437 - 34957519
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcat 299  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||         || |||||||||||||||||||||||||||||    
T  34957437 tctcaaaataattatcactttaaaataccaatgtaacatttatta---ttttttccgttactatatccttatttattgaatttcat 34957519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 27471268 - 27471312
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  27471268 tctcaaaataattgtcactttataataccaatacagcatttatta 27471312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 30710582 - 30710626
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  30710582 tctcaaaataattgtcactttagaatatcaatgcaacatttatta 30710626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 313
Target Start/End: Complemental strand, 37695837 - 37695751
Alignment:
Q  226 tgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||| ||||||||||||||||||||||         |||||| |||| ||||||||||||||||||||| || |||||||||    
T  37695837 tgtcactttagaataccaatgcaacatttattatttttttt-ccattattatacccttatttattgaatttcatctaacttaactact 37695751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 37773148 - 37773105
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  37773148 tctcaaaataattgtcactttacaataccaatgcagcatttatt 37773105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 39043932 - 39043893
Alignment:
Q  219 aaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  39043932 aaataattgtcactttagaataccaatgcaacatttatta 39043893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 5323067 - 5323021
Alignment:
Q  268 ccattactatatccttatttattgaatttcatcaaatttaactactt 314  Q
    |||||| |||| |||||||||||||||||||||||| ||||||||||    
T  5323067 ccattattatacccttatttattgaatttcatcaaacttaactactt 5323021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 38137626 - 38137532
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactac 312  Q
    |||||||||||||||||||  ||||| ||||||| ||||||||         ||| || |||||| ||||||||||||||||||| |||||||||||    
T  38137626 tcaaaataattgtcactttgcaatactaatgcaatatttattattatttt--ccactattatatctttatttattgaatttcatcgaatttaactac 38137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 38795277 - 38795317
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacattt 254  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  38795277 tctcaaaataattgtcactttagaataccaatgcaatattt 38795317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 43715239 - 43715283
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||    
T  43715239 tctcaaaataattgtcactttagaatatcaatgtaacatttatta 43715283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 45710782 - 45710822
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacattt 254  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  45710782 tctcaaaataattgtcactttataataccaatacaatattt 45710822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 19822944 - 19823039
Alignment:
Q  214 tctcaaaataattgtcac-tttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaacta 311  Q
    |||||||||||||||||| |||| |||||||||||| |||||||||          ||||| |||| ||||||||||||||||||||| || |||||||    
T  19822944 tctcaaaataattgtcacttttagaataccaatgcagcatttattattttttt---cattaatatacccttatttattgaatttcatccaacttaacta 19823039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 37311886 - 37311980
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||| |||| ||||||| |||||||||         | |||| ||||  ||||||||||||||||||| |||||||||||||    
T  37311886 aaaataattgtcactttacaatatcaatgcagcatttatta-ttatttttctattattatactcttatttattgaatttcattaaatttaactact 37311980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 37804671 - 37804714
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||| ||||| |||| ||||||||||||||||    
T  37804671 tctcaaaataattgtccctttagaatatcaatgcaacatttatt 37804714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 53560149 - 53560192
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||    
T  53560149 tctcaaaataattgtcactttagaatactaatgcagcatttatt 53560192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 24569276 - 24569235
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||||| ||||||||||  |||||||||    
T  24569276 tcaaaataattgtcactttacaataccaatgtgacatttatt 24569235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 41038571 - 41038476
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactacttc 315  Q
    |||||||||||||||||| ||||| |||||| |||||||||         ||||||  |||||||||||||||||| |||| | || |||||||||||    
T  41038571 aaaataattgtcactttaaaatacaaatgcagcatttatta--tttttttccattataatatccttatttattgaacttcaaccaacttaactacttc 41038476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 1778318 - 1778362
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| | || ||||||| |||||||||    
T  1778318 tctcaaaataattgtcactttacagtatcaatgcatcatttatta 1778362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 26467101 - 26467141
Alignment:
Q  275 tatatccttatttattgaatttcatcaaatttaactacttc 315  Q
    |||||| ||||||||||||||||||| || |||||||||||    
T  26467101 tatatcattatttattgaatttcatctaacttaactacttc 26467141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 27549464 - 27549424
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||| |||||||||| |||| |||||||||||||||||    
T  27549464 aaaataactgtcactttacaatatcaatgcaacatttatta 27549424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 30190842 - 30190798
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||  |||| |||||||||||    
T  30190842 tctcaaaataattgtcactttagaataaaaatgtaacatttatta 30190798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 36460598 - 36460554
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||||    
T  36460598 tctcaaaataattgtcactttacgatatcaatgcaatatttatta 36460554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 37741532 - 37741572
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| |||| |||| ||||||||||||    
T  37741532 aaaataattgtcactttaaaatatcaatacaacatttatta 37741572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 39043818 - 39043846
Alignment:
Q  3 acctttattaattgtagttagtggagtag 31  Q
    |||||||||||||||||||||||||||||    
T  39043818 acctttattaattgtagttagtggagtag 39043846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 40462253 - 40462297
Alignment:
Q  213 atctcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    ||||||||||| ||||||||||| |||  ||||||||||||||||    
T  40462253 atctcaaaatagttgtcactttagaatgtcaatgcaacatttatt 40462297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 48541170 - 48541130
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  48541170 aaaataattgtcattttataatatcagtgcaacatttatta 48541130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 49447914 - 49447878
Alignment:
Q  275 tatatccttatttattgaatttcatcaaatttaacta 311  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  49447914 tatacccttatttattaaatttcatcaaatttaacta 49447878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 51065195 - 51065151
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||| |||||||||||| |||| |||||||||||| |||||||||    
T  51065195 tctctaaataattgtcattttacaataccaatgcagcatttatta 51065151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 51838142 - 51838098
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||   ||||||||||||||||    
T  51838142 tctcaaaataattgtcactttacaattataatgcaacatttatta 51838098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 54726418 - 54726462
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||  |||||| ||||| ||||||||||||||||    
T  54726418 tctcaaaataattgcaactttagaatactaatgcaacatttatta 54726462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 13335150 - 13335246
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| ||||||||||||||||||||||         |||||| |||| ||| |||||||||||||||||||| |||||||||    
T  13335150 tctcaaaataattgtcactttagaataccaatgcaacatttatta---ttttttccattattataccctgatttattgaatttcatcaaacttaactact 13335246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 9300298 - 9300199
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||         ||| || |||||||||||||||||||||||||  || |||||||||    
T  9300298 tctcaaaataattgtcactttacaataccaatgcagtatttattatttctttccccactattatatccttatttattgaatttcattcaacttaactact 9300199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 22772018 - 22771974
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  22772018 tctcaaaataattgtcactttagaataccaatgcaacatttatta 22771974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 396790 - 396750
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  396790 aaaataattgtcactttagaataccaatgcaacatttatta 396750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 5053335 - 5053239
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||| ||||||||||||||||          |||||| ||||  |||||||||||||| ||||| ||||||||||||    
T  5053335 tctcaaaataattgtcactttaaaatatcaatgcaacatttatt---tttttccccattattatactcttatttattgaatctcatccaatttaactact 5053239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 10180126 - 10180086
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  10180126 aaaataattgtcactttagaataccaatgcaacatttatta 10180086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 10953915 - 10953871
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  10953915 tctcaaaataattgtcactttacgataccaatgcaacatttatta 10953871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 10961920 - 10961876
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  10961920 tctcaaaataattgtcactttacgataccaatgcaacatttatta 10961876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 17719441 - 17719397
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||    
T  17719441 tctctaaataattgtcactttagaataccaatgcaacatttatta 17719397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 21216279 - 21216240
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  21216279 aaaataattgtcactttacaataccaatgcaacatttatt 21216240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 40996544 - 40996505
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatt 253  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  40996544 tctcaaaataattgtcactttagaataccaatgcaacatt 40996505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 1875916 - 1875878
Alignment:
Q  220 aataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  1875916 aataattgtcactttacaataccaatgcaacatttatta 1875878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 32476221 - 32476319
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||||||||||| | | |||||          ||||  |||| |||||||||||||||||||||||| |||||||||    
T  32476221 tctcaaaataattgtcactttagaataccaatgcagcgtatattattttttt---cattgttatacccttatttattgaatttcatcaaacttaactact 32476317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 26626295 - 26626212
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcat 299  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||         |||||| |||| ||||||||||||||||||||    
T  26626295 tctcaaaataattgtcactttaaaatatcaatgcagcatttatta--ttttttcccattattatacccttatttattgaatttcat 26626212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 31231667 - 31231707
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  31231667 aaaataattgtcattttataataccaatgcatcatttatta 31231707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 34948868 - 34948824
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||||    
T  34948868 tctcaaaataattgttactttagaataccaatgcaatatttatta 34948824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 39482545 - 39482589
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||    
T  39482545 tctcaaaataattgtcactttacaataccaatgcagtatttatta 39482589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 25285141 - 25285098
Alignment:
Q  213 atctcaaaataattgtcactttataataccaatgcaacatttat 256  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||    
T  25285141 atctcaaaataattgtcactatataataacaacgcaacatttat 25285098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 36007072 - 36007029
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||    
T  36007072 tctcaaaataattgtcactttagaatactaatgcaacaattatt 36007029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 14854994 - 14855024
Alignment:
Q  1 acacctttattaattgtagttagtggagtag 31  Q
    |||||||||||||||||||||||||||||||    
T  14854994 acacctttattaattgtagttagtggagtag 14855024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 29226708 - 29226666
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||| |||| ||||||| |||||||||    
T  29226708 tcaaaataattgtcactttaaaatatcaatgcagcatttatta 29226666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 39405697 - 39405739
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||| |||| ||||||| |||||||||    
T  39405697 tcaaaataattgtcactttagaatatcaatgcagcatttatta 39405739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 44761675 - 44761641
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgca 248  Q
    |||||||||||||||||||||| ||||||||||||    
T  44761675 tctcaaaataattgtcactttacaataccaatgca 44761641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 45425848 - 45425806
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||| |||| ||||| |||||||||||    
T  45425848 tcaaaataattgtcactttacaatatcaatgtaacatttatta 45425806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 50753 - 50793
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| |||| ||||||| |||||||||    
T  50753 aaaataattgtcactttagaatatcaatgcagcatttatta 50793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 2767480 - 2767436
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||| ||||||||||||||||| ||||| ||| ||||||||||||    
T  2767480 tctcgaaataattgtcactttagaatactaatacaacatttatta 2767436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 10098175 - 10098131
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||| |||||| ||||||||| || |||||||||    
T  10098175 tctcaaaataattgttactttagaataccaatacatcatttatta 10098131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 17823855 - 17823899
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||| ||||||||| |||| ||| ||||||||    
T  17823855 tctcaaaataattgtcaatttataataacaatacaatatttatta 17823899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 32678353 - 32678393
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| |||| ||||||| |||||||||    
T  32678353 aaaataattgtcactttaaaatatcaatgcatcatttatta 32678393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 34394137 - 34394097
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| ||||||||||||  ||||||||    
T  34394137 aaaataattgtcactttaaaataccaatgcataatttatta 34394097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 39466220 - 39466176
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||| |||||||| |||||| || ||||||||||||    
T  39466220 tctcaaaataattatcactttacaataccgatacaacatttatta 39466176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 21390234 - 21390332
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||||||||||||||||||||||||||||||||||| |||||||         |||||| |||| ||||||||||||||||||||| || |||||||||    
T  21390234 tctcaaaataattgtcactttataataccaatgcaacgtttatta-ttttttttccattattatacccttatttattgaatttcatctaacttaactact 21390332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 759280 - 759183
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||||||||||| |||||||||         |||||| |||| ||||||||||||||||||||| || |||||||||    
T  759280 tctcaaaataattgtcactttagaataccaatgcagcatttatta--tttttttccattattatacccttatttattgaatttcatccaacttaactact 759183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 34947440 - 34947537
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| ||||||||||||||||||||||         |||||| |||| ||| ||||||||||||||||| || |||||||||    
T  34947440 tctcaaaataattgtcactttagaataccaatgcaacatttatta--tttttttccattattataccctcatttattgaatttcatccaacttaactact 34947537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 25571360 - 25571404
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  25571360 tctcaaaataattgtcactttagaataccaatgcaacatttatta 25571404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 37245630 - 37245674
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  37245630 tctcaaaataattgtcactttacaataccaatgcaacatttatta 37245674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 40076258 - 40076302
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  40076258 tctcaaaataattgtcactttataataccaatgcagcatttatta 40076302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 83324 - 83422
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||||||||||| |||||||||         ||||||  |||  ||||||||||||||||||||||| |||||||||    
T  83324 tctcaaaataattgtcactttagaataccaatgcagcatttatta-ttttttttccattatcatactcttatttattgaatttcatcaaacttaactact 83422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 21350815 - 21350717
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||||||||||| |||||||||         ||| || |||| ||||||||||||||||||||| || |||||||||    
T  21350815 tctcaaaataattgtcactttacaataccaatgcagcatttatta-ttttttttccactattatacccttatttattgaatttcatccaacttaactact 21350717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 36790678 - 36790764
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatc 300  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||         |||||| |||| |||||||||||||||||||||    
T  36790678 tctcaaaataattgtcactttagaatagcaatgcagcatttattattattttttccattattatacccttatttattgaatttcatc 36790764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 19271921 - 19271877
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||    
T  19271921 tctcaaaataattgttactttacaataccaatgcaacatttatta 19271877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 21760173 - 21760129
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  21760173 tctcaaaataattgtcactttagaatatcaatgcaacatttatta 21760129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 42935598 - 42935642
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  42935598 tctcaaaataattgtcactttagaatacaaatgcaacatttatta 42935642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 33819154 - 33819196
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  33819154 tcaaaataattgtcactttacaataccaatgcagcatttatta 33819196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 24166929 - 24166974
Alignment:
Q  213 atctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||    
T  24166929 atcttaaaataattgtcactttacaataccaatgcaatatttatta 24166974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 47045655 - 47045618
Alignment:
Q  213 atctcaaaataattgtcactttataataccaatgcaac 250  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  47045655 atctcaaaataattgtcactttagaataccaatgcaac 47045618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 23670425 - 23670469
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||    
T  23670425 tctcaaaataattgtcactttacaatactaatgcatcatttatta 23670469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 27920926 - 27920970
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||    
T  27920926 tctcaaaataattgtcactttagaatattaatgcaacatttatta 27920970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 28103670 - 28103714
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||    
T  28103670 tctcaaaataattgtcactttacaatacaattgcaacatttatta 28103714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 28202498 - 28202454
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||| || |||||||||    
T  28202498 tctcaaaataattgtcactttagaataccaatacagcatttatta 28202454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 31930691 - 31930647
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||    
T  31930691 tctcaaaataattgtcactttagaatatcaatgaaacatttatta 31930647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 34100732 - 34100692
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  34100732 aaaataattgtcactttacaatactaatgcaacatttatta 34100692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 43873863 - 43873907
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||    
T  43873863 tctcaaaataattgtcactttagaatatcaatgcagcatttatta 43873907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 2459413 - 2459455
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||| ||||||| |||||||||||| |||||||||    
T  2459413 tcaaaataattgacactttacaataccaatgcagcatttatta 2459455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 3178270 - 3178300
Alignment:
Q  1 acacctttattaattgtagttagtggagtag 31  Q
    |||||||||||||||||||||||||||||||    
T  3178270 acacctttattaattgtagttagtggagtag 3178300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 7457607 - 7457565
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||| |||||||| |||| |||||||||||||||||    
T  7457607 tcaaaataattatcactttacaatatcaatgcaacatttatta 7457565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 21760359 - 21760321
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacat 252  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  21760359 tctcaaaataattgtcacgttaaaataccaatgcaacat 21760321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 3178341 - 3178296
Alignment:
Q  268 ccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||| |||| ||||||||||||||||||||| || |||||||||    
T  3178341 ccattaatatacccttatttattgaatttcatccaacttaactact 3178296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 9785928 - 9785972
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||  |||||| |||||||||    
T  9785928 tctcaaaataattgtcactttaaaatattaatgcagcatttatta 9785972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 11373617 - 11373573
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||| |||||| |||| ||||||| |||||||||    
T  11373617 tctcaaaataattgttactttacaatatcaatgcagcatttatta 11373573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 24516478 - 24516434
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||| |||||||||||| |||| |||| |||||||||||||||||    
T  24516478 tctcgaaataattgtcattttacaatatcaatgcaacatttatta 24516434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 30865960 - 30866004
Alignment:
Q  269 cattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||| |||||| ||||||||||||||||||| || |||||||||    
T  30865960 cattattatatctttatttattgaatttcatctaacttaactact 30866004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 37490319 - 37490359
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||| ||| ||||||||| ||||||||||||||||||||||    
T  37490319 aaaacaatagtcactttaaaataccaatgcaacatttatta 37490359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 44424085 - 44424129
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||| |||||||| |||| ||||||| |||||||||    
T  44424085 tctcaaaataattatcactttaaaatatcaatgcagcatttatta 44424129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 28501073 - 28500976
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaacta 311  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||||         |||||| |||| |||||||||||||||||||||||| |||||||    
T  28501073 tctcaaaataattgtctctttagaataccaatacaacatttattattttttttcccattattatacccttatttattgaatttcatcaaacttaacta 28500976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 49746895 - 49746991
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||| ||||||||||||||||||||||         |||||| |||| ||||||||||||||||||||| || |||||||||    
T  49746895 tcaaaataattgtcactttacaataccaatgcaacatttatta-ttatttttccattattatacccttatttattgaatttcatccaacttaactact 49746991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 35380522 - 35380478
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35380522 tctcaaaataattgtcactttataataccaatgcaacatttatta 35380478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 35311413 - 35311369
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  35311413 tctcaaaataattgtcactttacaataccaatgcaacatttatta 35311369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 52859982 - 52859938
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  52859982 tctcaaaataattgtcactttagaataccaatgcaacatttatta 52859938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 38405291 - 38405194
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactac 312  Q
    |||||||||||||||||||||| |||| |||||||||||||||||         |||||| |||| | ||||||||||||||||||| || ||||||||    
T  38405291 tctcaaaataattgtcactttagaatagcaatgcaacatttatta-ctttttttccattattatacctttatttattgaatttcatccaacttaactac 38405194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 11907787 - 11907743
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  11907787 tctcaaaataattgtcactttagaataccaatgcagcatttatta 11907743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 22129975 - 22130019
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||    
T  22129975 tctcaaaataattgtcattttacaataccaatgcaacatttatta 22130019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 25233115 - 25233159
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  25233115 tctcaaaataattgtcactttagaatatcaatgcaacatttatta 25233159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 33790921 - 33790822
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| ||| |||| ||| ||||||||          |||||| |||| ||||||||||||||||||||| || |||||||||    
T  33790921 tctcaaaataattgtcactttagaattccaacgcagcatttattttttttctttccattattatacccttatttattgaatttcatccaacttaactact 33790822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 42617091 - 42617047
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  42617091 tctcaaaataattgtcactttagaatacaaatgcaacatttatta 42617047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 47773207 - 47773163
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  47773207 tctcaaaataattgtcactttagaataccaatgcagcatttatta 47773163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 49176123 - 49176079
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||    
T  49176123 tctcaaaataattgtcactttagaataccaatgcaacaattatta 49176079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 26147806 - 26147763
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||||||| ||||||||| |||||||||||    
T  26147806 tctcaaaataattgtcactttagaataccaatacaacatttatt 26147763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 21240888 - 21240795
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||||||||| |||||||||| |||| |||||||||||||||           |||||| |||| ||||||||||||||||||||| || |||||||||    
T  21240888 tctcaaaataaatgtcactttagaatatcaatgcaacatttat------attttccattattatacccttatttattgaatttcatccaacttaactact 21240795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 47359160 - 47359115
Alignment:
Q  213 atctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||    
T  47359160 atctcaaaataattgtctctttataatatcaatgtaacatttatta 47359115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 2066724 - 2066768
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||| | |||||||||    
T  2066724 tctcaaaataattgtcactttagaataccaatgaagcatttatta 2066768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 4972506 - 4972550
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||| |||||||||| |||||||||| |||||||||||    
T  4972506 tctcaaaataactgtcactttacaataccaatgtaacatttatta 4972550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 5841616 - 5841572
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||    
T  5841616 tctcaaaataattgtcactttagaatatcaatgcatcatttatta 5841572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 16821516 - 16821476
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  16821516 aaaataattgtcactttagaataccaatgcagcatttatta 16821476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 40123039 - 40122999
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  40123039 aaaataattatcactttacaataccaatgcaacatttatta 40122999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 51624719 - 51624763
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||    
T  51624719 tctcaaaataattgtcactttacaatatcaatgtaacatttatta 51624763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 2653357 - 2653450
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||| ||||||||||| |||| |||||||||||||||||         |||||| |||| | ||||||||| ||||||||| ||||||||||||    
T  2653357 aaaatagttgtcactttagaatatcaatgcaacatttatta--tctttttccattattatacctttatttattaaatttcatccaatttaactact 2653450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 49428529 - 49428433
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| || | |||||||||||||||||         |||||| |||| ||||||||||||||||||||| || |||| ||||    
T  49428529 tctcaaaataattgtcactttagaa-atcaatgcaacatttatta--cttttttccattattatacccttatttattgaatttcatccaacttaattact 49428433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 5618483 - 5618524
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||||| |||| ||||||| ||||||||    
T  5618483 tcaaaataattgtcactttaaaatatcaatgcagcatttatt 5618524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 25142508 - 25142471
Alignment:
Q  275 tatatccttatttattgaatttcatcaaatttaactac 312  Q
    |||||||||||||||||||||||||| || ||||||||    
T  25142508 tatatccttatttattgaatttcatccaacttaactac 25142471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 52868908 - 52868949
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    ||||||||||||||| |||||||||| ||| |||||||||||    
T  52868908 tcaaaataattgtcattttataatactaattcaacatttatt 52868949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 3098415 - 3098459
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||| |||| ||| |||| |||||||||||||||||    
T  3098415 tctcaaaataattatcacgttaaaatatcaatgcaacatttatta 3098459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 7061852 - 7061808
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||| |||||| |||| |||| ||||||||||||    
T  7061852 tctcaaaataattgttactttaaaatatcaatacaacatttatta 7061808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 10754307 - 10754351
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||| | || ||||||||||||||| ||||||    
T  10754307 tctcaaaataattgtcaatctaaaataccaatgcaacaattatta 10754351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 10968076 - 10968120
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||| | || ||||||||||||||| ||||||    
T  10968076 tctcaaaataattgtcaatctaaaataccaatgcaacaattatta 10968120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 19265744 - 19265780
Alignment:
Q  219 aaataattgtcactttataataccaatgcaacattta 255  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  19265744 aaataattgtcactttagaatactaatgcaacattta 19265780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 21698693 - 21698653
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| |||| |||||||| ||||||||    
T  21698693 aaaataattgtcactttaaaatatcaatgcaatatttatta 21698653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 35251885 - 35251929
Alignment:
Q  269 cattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||| |||||||||||||||||||||||||| || |||| ||||    
T  35251885 cattattatatccttatttattgaatttcatctaacttaattact 35251929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 42517830 - 42517790
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| ||||| |||||| |||||||||    
T  42517830 aaaataattgtcactttaaaatacaaatgcagcatttatta 42517790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 54506774 - 54506818
Alignment:
Q  269 cattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||| ||||| |||||| |||||||||||||||| |||||||||    
T  54506774 cattattatattcttattaattgaatttcatcaaacttaactact 54506818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 54921804 - 54921772
Alignment:
Q  213 atctcaaaataattgtcactttataataccaat 245  Q
    ||||||||||||||||||||||| |||||||||    
T  54921804 atctcaaaataattgtcactttacaataccaat 54921772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 6785189 - 6785286
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||||| |||||||||||||||         ||| || |||| |||||||||||||||||||||||| |||||||||    
T  6785189 tctcaaaataattgtcactttacaatacctatgcaacatttatta--tttttttccactattatacccttatttattgaatttcatcaaacttaactact 6785286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 23169176 - 23169132
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  23169176 tctcaaaataattgtcactttacaataccaatgcaacatttatta 23169132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 39864045 - 39864141
Alignment:
Q  215 ctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||||||||||||||||||| |||| |||||||||||||||||         ||| || |||| ||||||||||||||||||||| || |||||||||    
T  39864045 ctcaaaataattgtcactttacaatatcaatgcaacatttatta--tttttttccactattatacccttatttattgaatttcatccaacttaactact 39864141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 12039015 - 12039059
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  12039015 tctcaaaataattgtcactttacaatactaatgcaacatttatta 12039059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 20210025 - 20209981
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  20210025 tctcaaaataattgtcactttagaataccaatgcagcatttatta 20209981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 24991839 - 24991795
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  24991839 tctcaaaataattgtcactttacaatactaatgcaacatttatta 24991795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 35367735 - 35367779
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||| |||||||||||    
T  35367735 tctcaaaataattgtcactttacaataccaatgaaacatttatta 35367779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 37506057 - 37506101
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  37506057 tctcaaaataattgtcactttagaatatcaatgcaacatttatta 37506101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 49224171 - 49224127
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  49224171 tctcaaaataattgtcactttagaatactaatgcaacatttatta 49224127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 4659710 - 4659749
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatt 253  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  4659710 tctcaaaataattgtcactttacaataccaatgcaacatt 4659749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 12151123 - 12151165
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  12151123 tcaaaataattgtcactttataatatcaatgcagcatttatta 12151165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 40145030 - 40144988
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  40145030 tcaaaataattgtcactttagaatatcaatgcaacatttatta 40144988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 10495772 - 10495809
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaaca 251  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  10495772 tctcaaaataattgtcactttataatatcaatgcaaca 10495809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 33733447 - 33733364
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcat 299  Q
    |||||||||||||||||||||| |||||||||| | |||||||||         |||||| |||| ||||||||||||||||||||    
T  33733447 tctcaaaataattgtcactttagaataccaatgaagcatttatta--ttcttttccattattatacccttatttattgaatttcat 33733364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 38787326 - 38787371
Alignment:
Q  268 ccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||    
T  38787326 ccattattatacccttatttattgaatttcatccaatttaactact 38787371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 3312056 - 3312096
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  3312056 aaaataattgtcactttataatatcaatacaacatttatta 3312096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 16395230 - 16395134
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||||||||| |  ||||||||          ||||| |||||| ||||||||||||||||||| || |||||||||    
T  16395230 tctcaaaataattgtcactttagaataccaatgtaggatttattattttttt---cattattatatcattatttattgaatttcatctaacttaactact 16395134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 26256273 - 26256229
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||| |||||||||||||||||| | |||||||||    
T  26256273 tctcaaaataattgccactttataataccaatgtatcatttatta 26256229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 41122008 - 41121964
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| |||| ||||||||||||    
T  41122008 tctcaaaataattgtcactttaaaatatcaatacaacatttatta 41121964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 43500925 - 43500881
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||    
T  43500925 tctcaaaataattgtcactttagaatactaatgcagcatttatta 43500881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 45331276 - 45331316
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  45331276 aaaataattgttactttaaaataccaatgcaacatttatta 45331316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 52429279 - 52429319
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  52429279 aaaataattgtcactttacaatatcaatgcaacatttatta 52429319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 25089219 - 25089172
Alignment:
Q  268 ccattactatatccttatttattgaatttcatcaaatttaactacttc 315  Q
    |||||| |||| ||||||||||||||||||||| || |||||||||||    
T  25089219 ccattagtatacccttatttattgaatttcatccaacttaactacttc 25089172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 29074817 - 29074856
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  29074817 aaaataattgtcactttataatacaaatacaacatttatt 29074856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 45775488 - 45775445
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    |||||||||||||||||||||||||||| |||||  ||||||||    
T  45775488 tctcaaaataattgtcactttataatactaatgcgccatttatt 45775445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 6160635 - 6160593
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttat 256  Q
    ||||||||||||||||| |||| |||| |||||||||||||||    
T  6160635 tctcaaaataattgtcattttagaatatcaatgcaacatttat 6160593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 28748926 - 28748968
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||    
T  28748926 tcaaaataattatcactttataatagcaatgcagcatttatta 28748968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 37275536 - 37275574
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacattt 254  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  37275536 tcaaaataattgtcactttagaatatcaatgcaacattt 37275574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 37276447 - 37276489
Alignment:
Q  269 cattactatatccttatttattgaatttcatcaaatttaacta 311  Q
    ||||| |||| ||||||||||||||||||||| ||||||||||    
T  37276447 cattattatacccttatttattgaatttcatccaatttaacta 37276489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 52837216 - 52837254
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacat 252  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  52837216 tctcaaaataattgccactttataatagcaatgcaacat 52837254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 313
Target Start/End: Complemental strand, 13579801 - 13579709
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||| |||||| |||||| ||||||||           |||| |||| |||||||||||||||||||||||| |||| ||||    
T  13579801 aaaataattgtcactttaaaataccgatgcaatatttattattattttt---attattatacccttatttattgaatttcatcaaacttaaatact 13579709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 15699073 - 15699114
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacattta 255  Q
    |||||||||||||||||||||| |||| ||||||| ||||||    
T  15699073 tctcaaaataattgtcactttagaatatcaatgcagcattta 15699114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 37539124 - 37539157
Alignment:
Q  280 ccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||||| |||||||||    
T  37539124 ccttatttattgaatttcatcaaacttaactact 37539157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 17988930 - 17988886
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||| |||| ||||  ||||||||||||||||    
T  17988930 tctcaaaataattgtcattttaaaatattaatgcaacatttatta 17988886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 21910193 - 21910149
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||| |||||||||||||||| |||| |||||| ||||||||||    
T  21910193 tctcagaataattgtcactttaaaatatcaatgccacatttatta 21910149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 30437741 - 30437777
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacattt 254  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  30437741 aaaataattgtcaatttataatactaatgcaacattt 30437777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 31042730 - 31042774
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| |||| || |||||||||    
T  31042730 tctcaaaataattgtcactttagaatatcaatacatcatttatta 31042774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 252985 - 252941
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  252985 tctcaaaaaaattgtcactttataataccaatgcaacatttatta 252941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 6801863 - 6801907
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  6801863 tctcaaaataattgtcactttataatatcaatgcaacatttatta 6801907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 21010104 - 21010203
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |         |||||| ||||   ||||||||||||||||||| || |||||||||    
T  21010104 tctcaaaataattgtcactttataataccaatgcagcatttataatttttttttccattattatactgttatttattgaatttcatccaacttaactact 21010203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 21425738 - 21425639
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactacttc 315  Q
    ||||||||||||| |||||| |||| |||||||||||||||||         |||  | |||||||||||||||||||||||||| || |||||||||||    
T  21425738 tcaaaataattgttactttacaatatcaatgcaacatttattattattttttccaccattatatccttatttattgaatttcatccaacttaactacttc 21425639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 29363237 - 29363334
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaacta 311  Q
    |||||||||||||||||||| | |||||||||||| |||||||||         |||||| ||||  |||||||||||||||||||| || |||||||    
T  29363237 tctcaaaataattgtcacttcagaataccaatgcagcatttattattattttttccattattatactcttatttattgaatttcatccaacttaacta 29363334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 15058055 - 15058095
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  15058055 aaaataattgtcactttataataccgatgcaacatttatta 15058095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 21478276 - 21478232
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  21478276 tctcaaaataattgtcactttacaataccaatacaacatttatta 21478232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 27367280 - 27367236
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  27367280 tctcaaaataattgtcactttagaataccaatgcatcatttatta 27367236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 27457627 - 27457583
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  27457627 tctcaaaataattgtcactttagaataccaatgcatcatttatta 27457583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 30716832 - 30716876
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  30716832 tctcaaaataattgtcactttagaataccagtgcaacatttatta 30716876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 11656128 - 11656030
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactact 313  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||         |||||| |||| ||||||||||||||||||||| || || ||||||    
T  11656128 tctcaaaataattgtcactttagaatatcaatgcagcatttatta-tttttttcccattattatacccttatttattgaatttcatccaactttactact 11656030  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 23142601 - 23142643
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttat 256  Q
    |||||||||||||||||||||| |||| |||||||||||||||    
T  23142601 tctcaaaataattgtcactttacaatatcaatgcaacatttat 23142643  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 23397796 - 23397754
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  23397796 tcaaaataattgtcactttagaatatcaatgcaacatttatta 23397754  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 31283576 - 31283488
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaact 310  Q
    ||||||||||||| |||||||| |||| ||||||||||||| ||          |||||| |||||||||||||||||||||||||| || ||||||    
T  31283576 tctcaaaataattatcactttaaaataacaatgcaacatttttt--------tcccattattatatccttatttattgaatttcatccaacttaact 31283488  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 5302284 - 5302328
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||    
T  5302284 tctcaaaataattgtcactttagaatactaatgcagcatttatta 5302328  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 13207273 - 13207229
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||    
T  13207273 tctcataataattgtcactttagactaccaatgcaacatttatta 13207229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 27367607 - 27367524
Alignment:
Q  215 ctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttca 298  Q
    |||| |||||||||||||||| |||||||||| |||||||||||         ||| || |||| |||||||||||||||||||    
T  27367607 ctcagaataattgtcactttacaataccaatgtaacatttattagttttttttccactattatacccttatttattgaatttca 27367524  T

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Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 27457954 - 27457871
Alignment:
Q  215 ctcaaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttca 298  Q
    |||| |||||||||||||||| |||||||||| |||||||||||         ||| || |||| |||||||||||||||||||    
T  27457954 ctcagaataattgtcactttacaataccaatgtaacatttattagttttttttccactattatacccttatttattgaatttca 27457871  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 181491 - 181533
Alignment:
Q  215 ctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  181491 ctcaaaataattgtcactttacaata-caatgcaacatttatta 181533  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 7920174 - 7920217
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatt 257  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||    
T  7920174 tctcaaaataattatcactttagaatatcaatgcaacatttatt 7920217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 1956150 - 1956116
Alignment:
Q  224 attgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||||| |||||||||||||||||    
T  1956150 attgtcactttataataacaatgcaacatttatta 1956116  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 315
Target Start/End: Original strand, 34299931 - 34300027
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttattannnnnnnnnccattactatatccttatttattgaatttcatcaaatttaactacttc 315  Q
    |||||||||||||||||| |||| |||| ||||||||||||         ||| || ||||||||||||||||||||  |||| || |||||||||||    
T  34299931 aaaataattgtcactttagaatatcaatacaacatttatta-ttttctttccactaatatatccttatttattgaataccatccaacttaactacttc 34300027  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 1781738 - 1781778
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacattt 254  Q
    |||||||||||||||||||||| |||| || ||||||||||    
T  1781738 tctcaaaataattgtcactttacaatatcattgcaacattt 1781778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 11143767 - 11143723
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||| ||||||||||||| | |||||||||| |||||||||    
T  11143767 tctcaaaaaaattgtcactttagactaccaatgcagcatttatta 11143723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 12307775 - 12307731
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| ||||  ||| ||||||||||||    
T  12307775 tctcaaaataattgtcactttaaaatattaatacaacatttatta 12307731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 34657746 - 34657702
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||| |||||  ||||||||    
T  34657746 tctcaaaataattgtcactttacaatacctatgcagaatttatta 34657702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 8164 - 8120
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  8164 tctcaaaataattgtcactttagaataccaatgcagcatttatta 8120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 34200 - 34156
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||    
T  34200 tctcaaaataattgtcactttacaatatcaatgcatcatttatta 34156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 1493 - 1533
Alignment:
Q  218 aaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  1493 aaaataattgtcactttagaataccgatgcaacatttatta 1533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 313
Target Start/End: Complemental strand, 14284 - 14253
Alignment:
Q  282 ttatttattgaatttcatcaaatttaactact 313  Q
    ||||||||||||||||||||||||||||||||    
T  14284 ttatttattgaatttcatcaaatttaactact 14253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 864 - 826
Alignment:
Q  215 ctcaaaataattgtcactttataataccaatgcaacatt 253  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  864 ctcaaaataattgtcactttacaataccattgcaacatt 826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 50139 - 50181
Alignment:
Q  216 tcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    |||||||||||||||||||| |||| ||||||| |||||||||    
T  50139 tcaaaataattgtcactttagaatatcaatgcagcatttatta 50181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 22281 - 22325
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||| |||||||| |||||| || ||||||||||||    
T  22281 tctcaaaataattatcactttacaataccgatacaacatttatta 22325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 5325 - 5369
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacatttatta 258  Q
    ||||||||||||||| |||||| ||| ||||| ||||||||||||    
T  5325 tctcaaaataattgttactttagaatgccaatacaacatttatta 5369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 16972 - 17012
Alignment:
Q  214 tctcaaaataattgtcactttataataccaatgcaacattt 254  Q
    ||||||||||||| ||||||||||||| ||||||| |||||    
T  16972 tctcaaaataattatcactttataatatcaatgcagcattt 17012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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