View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0980_low_6 (Length: 252)
Name: NF0980_low_6
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 1328512 - 1328326
Alignment:
| Q |
10 |
aacaaaattctgcgacaaaacatactgctagtgcctgtatatattttattagttacctacttttgatcaatgaggtaaaacaatccaataacatatatct |
109 |
Q |
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| T |
1328512 |
aacaaaattctgctacaaaacatactgctaatgcctgtatatattttattagttacctacttttgatcaatgaggtaaaacaatccaataatatatatct |
1328413 |
T |
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| Q |
110 |
acagccatgcataatggaattgcagtaaggttgnnnnnnnnnntcatctacaagatagcagaacgtgagcggcagtaattaacacaaat |
198 |
Q |
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| T |
1328412 |
acagccatgcataatggaattgcagtgaggttg--aaaaaaaatcatctacaagatagaagaatgtgagcggcagtaattaacacaaat |
1328326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 44187209 - 44187126
Alignment:
| Q |
49 |
tatattttattagttacctacttttgatcaatgaggtaaaacaatccaataa---catatatctacagccatgcataatggaat |
129 |
Q |
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| T |
44187209 |
tatattttattagttgcctacttctgatcaatgaggtaaaacaagccaacaacagcatatatctacagccatgcataatggaat |
44187126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 4878980 - 4878920
Alignment:
| Q |
75 |
atcaatgaggtaaaacaatccaataacatatatctacagccatgcataatggaattgcagt |
135 |
Q |
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| T |
4878980 |
atcaatgaggtaaaacaagccaacaacatatacctacagccatgcataatggaactgcagt |
4878920 |
T |
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