View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0980_low_7 (Length: 251)
Name: NF0980_low_7
Description: NF0980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0980_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34436042 - 34436273
Alignment:
| Q |
1 |
cttgatttgaagctatgattatttcttggttgaacttaagctctagttagttgtgccaacaattaattgttccaaaaaagagtttcgatttcggaaatgg |
100 |
Q |
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| T |
34436042 |
cttgatttgaagctatgattttttcttggttgaacataagctctagttagttgtgccaacaattaattgttccaaaaaagagtttcgatttcggaaatgg |
34436141 |
T |
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| Q |
101 |
aagtaacttacttgatgcccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaacctg |
200 |
Q |
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| T |
34436142 |
aagtaacttacttgatgcccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaacctg |
34436241 |
T |
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| Q |
201 |
aagaaatcatgaaaatatttgaataaatctct |
232 |
Q |
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| T |
34436242 |
aagaaatcatgaaaatatttgaataaatctct |
34436273 |
T |
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Back To:
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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 30666466 - 30666560
Alignment:
| Q |
105 |
aacttacttgatgcccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaacct |
199 |
Q |
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| T |
30666466 |
aactcacttgattcccatcttagcaaagacaagctcagcttggaaagattttccctgtccttttcctccccagactccaagaatgagtggaacct |
30666560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 6854028 - 6854096
Alignment:
| Q |
108 |
ttacttgatgcccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctcccca |
176 |
Q |
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| T |
6854028 |
ttacctgattcccatcttggcaaatacaagctcacattgaaatgactttccttgacctttgcctcccca |
6854096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 45484597 - 45484665
Alignment:
| Q |
129 |
aaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaac |
197 |
Q |
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||||| ||| |||| ||| |||| ||| |||||||||||||| ||||| ||||||||||| | |||||| |
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| T |
45484597 |
aaagataagttcagtttgaaaagttttaccttgacctttaccaccccaaataccaagaattaaaggaac |
45484665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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