View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0981_high_1 (Length: 260)

Name: NF0981_high_1
Description: NF0981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0981_high_1
NF0981_high_1
[»] chr4 (8 HSPs)
chr4 (1-238)||(9581930-9582167)
chr4 (1-238)||(9587625-9587862)
chr4 (1-224)||(9593723-9593946)
chr4 (1-224)||(9569099-9569322)
chr4 (1-190)||(9602532-9602721)
chr4 (1-228)||(54295028-54295255)
chr4 (62-228)||(37897848-37898014)
chr4 (178-228)||(9574226-9574276)
[»] chr6 (18 HSPs)
chr6 (1-190)||(29012773-29012962)
chr6 (1-185)||(29131254-29131438)
chr6 (1-228)||(29145199-29145426)
chr6 (27-186)||(29300023-29300182)
chr6 (1-162)||(32740662-32740823)
chr6 (1-186)||(29152077-29152262)
chr6 (17-185)||(32744824-32744992)
chr6 (1-185)||(32960681-32960865)
chr6 (1-185)||(29124094-29124278)
chr6 (22-186)||(34278416-34278580)
chr6 (22-228)||(34281821-34282027)
chr6 (102-227)||(34258303-34258428)
chr6 (82-186)||(29137227-29137331)
chr6 (98-185)||(25520027-25520113)
chr6 (106-150)||(19697525-19697569)
chr6 (105-181)||(25319361-25319437)
chr6 (62-186)||(25528826-25528950)
chr6 (105-181)||(26149054-26149130)
[»] chr7 (1 HSPs)
chr7 (1-227)||(42446242-42446467)
[»] scaffold0134 (1 HSPs)
scaffold0134 (22-228)||(16194-16400)
[»] scaffold0613 (1 HSPs)
scaffold0613 (1-228)||(100-327)
[»] scaffold0054 (2 HSPs)
scaffold0054 (4-125)||(33418-33539)
scaffold0054 (22-125)||(39787-39890)
[»] scaffold0129 (2 HSPs)
scaffold0129 (60-120)||(10486-10546)
scaffold0129 (55-154)||(33551-33650)
[»] chr5 (5 HSPs)
chr5 (54-178)||(32642902-32643026)
chr5 (54-118)||(42413999-42414063)
chr5 (54-119)||(39724570-39724635)
chr5 (58-119)||(15807722-15807783)
chr5 (62-130)||(42637357-42637425)
[»] chr3 (1 HSPs)
chr3 (56-120)||(5162455-5162519)
[»] chr1 (1 HSPs)
chr1 (54-125)||(368801-368872)
[»] chr2 (2 HSPs)
chr2 (96-149)||(7429022-7429075)
chr2 (13-125)||(7488712-7488824)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9581930 - 9582167
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    ||||||||||||||| | || ||||| ||||||||||||| ||||||||||  |||||| ||||||||||||||||| |||||||||||||| |||||||    
9581930 aatatttctcctttcgttcccactccaataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcac 9582029  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatc 200  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||     
9582030 ccaaaattgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagatt 9582129  T
201 gaaacaatcatctaagtatgagggtatgtatgtgatga 238  Q
    ||||||||||||||||||||||||||||||||| ||||    
9582130 gaaacaatcatctaagtatgagggtatgtatgttatga 9582167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9587625 - 9587862
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    ||||||||||||||| | || ||||| ||||||||||||| ||||||||||  |||||| ||||||||||||||||| |||||||||||||| |||||||    
9587625 aatatttctcctttcgttcccactccaataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcac 9587724  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatc 200  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||     
9587725 ccaaaattgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagatt 9587824  T
201 gaaacaatcatctaagtatgagggtatgtatgtgatga 238  Q
    ||||||||||||||||||||||||||||||||| ||||    
9587825 gaaacaatcatctaagtatgagggtatgtatgttatga 9587862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9593723 - 9593946
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    ||||||||||||||| |||| |||||||| |||||||||| | ||||||||  ||| ||||||||||  ||||||||||| ||||||||||| |||||||    
9593723 aatatttctcctttcgtacccactccgatgggacgctcaatgaaagacaacggtccgacaatgaagaaattggtccacgattcctttataccgtattcac 9593822  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatc 200  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||||||||||| ||||||||| |||||  |||||||||||||||||| |||||||||    
9593823 ccaaaattgatatctgaaaattagttgtctctttatgatatgagatcaatgcaaaggacccatttaacaccaccaagtttatccacaatgcgtgaagatc 9593922  T
201 gaaacaatcatctaagtatgaggg 224  Q
    |||||||||||| |||||||||||    
9593923 gaaacaatcatccaagtatgaggg 9593946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9569322 - 9569099
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    ||||||||||||||  | || ||||||||||||||||||| ||||||||||  |||||||| |||||||||||||||||| ||||| || ||||||||||    
9569322 aatatttctccttttgtccccactccgataggacgctcaatgcaagacaacggtccaacaaggaagagtttggtccacgattccttaatgccatattcac 9569223  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatc 200  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| ||| || |||||  ||||||||||||||||||  |||| |||    
9569222 ccaaaatcgatatgtgaaaattagtcgtctcttcatgatatgagatcaacgcaatggccccgtttaacaccaccaagtttatccacaatgcttgaacatc 9569123  T
201 gaaacaatcatctaagtatgaggg 224  Q
    |||||||||||| |||||||||||    
9569122 gaaacaatcatccaagtatgaggg 9569099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 9602532 - 9602721
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    ||||||||||||||| | || || |||||||||||||||| ||||||||||  ||||||| | ||||||||||||||||||||||||||||| |||||||    
9602532 aatatttctcctttcatcccaaccccgataggacgctcaatgcaagacaacgatccaacattaaagagtttggtccacgactcctttataccgtattcac 9602631  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatg 190  Q
    ||||||||||||| ||||||||| |||| |||| ||||||||||||||||| || ||||||||| |||||  ||||||||||||||||||    
9602632 ccaaaattgatatttgaaaattattcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaatg 9602721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 54295028 - 54295255
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    |||||||| || ||| | || |||||||||||| |||||||  ||||||||  |||||||||||| |||||||||||||| ||  | | |||  ||||||    
54295028 aatatttcccccttcgtccccactccgataggatgctcaacataagacaacggtccaacaatgaaaagtttggtccacgattctatcacaccgaattcac 54295127  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatc 200  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||| |  || |||||| ||||||||||||  |||| |||    
54295128 ccaaaattgatatgtgaaaattagtggactcttcatgatatgagatcaatgcaatgcacccatttagtaccgccaaggttatccacaatgcttgaacatc 54295227  T
201 gaaacaatcatctaagtatgagggtatg 228  Q
     |||||||||||||||| ||||| ||||    
54295228 aaaacaatcatctaagtttgaggatatg 54295255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 37898014 - 37897848
Alignment:
62 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggaccc 161  Q
    ||||||||||||||||||| ||||| ||||||  ||| ||||||| ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||| |    
37898014 tgaagagtttggtccacgattccttcataccaagttcgcccaaaactgatacgtgaaaagtagtcgtctcttcatgatatgagaacaatgcaatggactc 37897915  T
162 attaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtatg 228  Q
    ||  ||||| ||||||||||||||||| |  | || ||| |||||||| || |||| ||||||||||    
37897914 atataacaccgccaagtttatccacaaagctttaacatcaaaacaatcgtccaagtctgagggtatg 37897848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 9574276 - 9574226
Alignment:
178 tttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtatg 228  Q
    |||||||||||||  |||| |||||||| ||||||||||||||||||||||    
9574276 tttatccacaatgcttgaacatcgaaactatcatctaagtatgagggtatg 9574226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 29012962 - 29012773
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    ||||||||||||||| | || |||||||||||||||| |||||||||||||  |||||||||||||||||||||||| || ||||| | |||  | || |    
29012962 aatatttctcctttcgtccccactccgataggacgcttaacgcaagacaacggtccaacaatgaagagtttggtccatgattccttcacaccgaaatccc 29012863  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatg 190  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| || || |||||||||| ||||||||    
29012862 ccaaaattgatatgtgaaaattagtcgtctctttatgatatgagaccaatgcaatggacccatttaataccgccaagtttaaccacaatg 29012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 29131438 - 29131254
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    ||||||||||||||  | || ||||| |||||||||||||||| ||||||   ||||||||||||||  ||||||||||| || ||||| ||| ||||||    
29131438 aatatttctccttttgtccccactccaataggacgctcaacgccagacaatggtccaacaatgaagatcttggtccacgattcttttatgccaaattcac 29131339  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 185  Q
    |||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||    
29131338 ccaaaattgatatgtgaaaagtagttgtgccttcatgatatgacatcaatgcaatggacacattcaacactgccaagtttatcca 29131254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 29145426 - 29145199
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    |||||||| |||||  | || |||||||||||| ||| || |||||| |    ||||| ||| |||||||||||||| || ||||| |||||  || |||    
29145426 aatatttccccttttatcccaactccgataggatgcttaatgcaagatagtggtccaagaataaagagtttggtccatgattccttcatacctaatccac 29145327  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatc 200  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |  |||| | ||| |||| ||||||||||||||  | || |||    
29145326 ccaaaattgatatgtgaaaattagtagtttgttcatgatatgagatcaatgcaatgaaatcatttatcactgccaggtttatccacaatgcttcaacatc 29145227  T
201 gaaacaatcatctaagtatgagggtatg 228  Q
    ||||||||||||||||| ||||||||||    
29145226 gaaacaatcatctaagtctgagggtatg 29145199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 29300182 - 29300023
Alignment:
27 gataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtc 126  Q
    |||||||||||  ||||||| ||||  ||||||| ||||||| ||||||||||| ||||||||||     |||||||||||||||||||||||| |||||    
29300182 gataggacgctggacgcaagccaacggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtagtc 29300083  T
127 gtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccac 186  Q
    || | ||  ||| |||||||||| |||||||||||||| |||||||||||||||||||||    
29300082 gtctttttttgaaatgagatcaaggcaatggacccatttaacacagccaagtttatccac 29300023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 32740662 - 32740823
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    ||||||||||||||| | || ||||| |||||||| | ||| | ||||||   ||||||||||||||||||||||||||| |||||||| ||  ||||||    
32740662 aatatttctcctttcgtccccactccaataggacgttgaacaccagacaatggtccaacaatgaagagtttggtccacgattcctttatgccgaattcac 32740761  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggaccca 162  Q
    |||||||||||| | ||||| |||| ||||||||||||| ||||||||| |||||| |||||    
32740762 ccaaaattgatacgagaaaagtagttgtgtcttcatgatgtgagatcaaggcaatgaaccca 32740823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 29152077 - 29152262
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    |||||||| || || || || ||||||||||||||||||||| ||| ||||  |||||| |||||||||||| ||||||| ||  | | |||   || ||    
29152077 aatatttccccatttttccccactccgataggacgctcaacgtaaggcaacggtccaaccatgaagagtttgatccacgattctctgaaaccgagttgac 29152176  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccac 186  Q
    ||||||||||||   ||||| ||||||| ||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||    
29152177 ccaaaattgatacacgaaaagtagtcgtctcttcattatatgagatcaatgctatggacccatttaacacacccaagtttatccac 29152262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 32744824 - 32744992
Alignment:
17 tacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtg 116  Q
    |||| ||||| ||||| || |||||||||| |||   ||||| | ||||||| |||||||| || || || ||||||   ||||||| ||||||||||||    
32744824 tacccactccaataggccgatcaacgcaaggcaatggtccaatagtgaagagattggtccatgattctttcataccaatctcacccataattgatatgtg 32744923  T
117 aaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 185  Q
    |||| ||||||| | ||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||    
32744924 aaaagtagtcgtcttttcataatatgagatcaatgcaatggacccatttaacaccgccaagtttctcca 32744992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 32960681 - 32960865
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    |||||||| || ||||| || ||||| |||||||||||||| |||| |||   || |||||| ||||||||| |||| || ||||| |||||   ||||     
32960681 aatatttcccccttcttccccactcccataggacgctcaacacaaggcaatggtctaacaataaagagtttgatccaagattccttcataccgatttcat 32960780  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 185  Q
    ||||||||||||  |||||| ||||||| ||||||   | ||||| |||||||||||||||||| | ||| ||||||||||||||    
32960781 ccaaaattgatacatgaaaagtagtcgtctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca 32960865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 29124278 - 29124094
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    |||||||| || ||| |||| ||||| |||||||| ||||| |||| |||   ||| | | ||||||| |||||||| || ||||| |||||    ||||    
29124278 aatatttcccccttcatacccactccaataggacgatcaacacaaggcaatggtcccatagtgaagagcttggtccatgattccttcataccgatctcac 29124179  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 185  Q
    ||| ||||||||| |||||| ||||| | | |||||||||||||| ||||||||||| |||||| ||||| ||||||||| ||||    
29124178 ccagaattgatatctgaaaagtagtcttcttttcatgatatgagaacaatgcaatggtcccatttaacactgccaagtttctcca 29124094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 34278416 - 34278580
Alignment:
22 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 121  Q
    ||||||||||||||||||||| ||| ||||  |||||| |||||||||||| |||| || || || | |||   || ||||||||| ||||   |||||     
34278416 actccgataggacgctcaacgtaaggcaacggtccaaccatgaagagtttgatccaagattctttgaaaccgagttgacccaaaatcgatacacgaaaag 34278515  T
122 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccac 186  Q
    ||||| | |||| |||||||| ||||||||| ||||||||||| |||||  ||||||||||||||    
34278516 tagtcatctctttatgatatgtgatcaatgctatggacccatttaacaccaccaagtttatccac 34278580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 34282027 - 34281821
Alignment:
22 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 121  Q
    ||||||||||||||||||||| ||| ||||  |||||| || ||||||||| ||||||| || || | |||   || ||||||||||||||   |||||     
34282027 actccgataggacgctcaacgtaaggcaacggtccaaccataaagagtttgatccacgattctttgaaaccgagttgacccaaaattgatacacgaaaag 34281928  T
122 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatga 221  Q
    || | || |||| | |||||||||||||||| ||| ||||||| |||||  |||||||| |||||  ||  | || ||| ||||||||||||| || ||     
34281927 tacttgtctctttacgatatgagatcaatgctatgtacccatttaacaccaccaagtttttccactttgctttaacatcaaaacaatcatctacgtctgg 34281828  T
222 gggtatg 228  Q
    |||||||    
34281827 gggtatg 34281821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 34258303 - 34258428
Alignment:
102 caaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcg 201  Q
    ||||||||||||||||||| | || || | ||||| ||||||||  || |||||| ||||||| ||||| |||||||||||||||  ||  | || |||     
34258303 caaaattgatatgtgaaaagttgtagttttttcattatatgagagtaaggcaatgaacccatttaacaccgccaagtttatccactttgctttaacatca 34258402  T
202 aaacaatcatctaagtatgagggtat 227  Q
    ||||||||||| | ||||||||||||    
34258403 aaacaatcatcaacgtatgagggtat 34258428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 29137331 - 29137227
Alignment:
82 tcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagttta 181  Q
    ||||| ||||||  |||||||||||| ||||  |||||| ||| | | | |||||||||||| |||||||||||||||  ||| |||||  |||||||||    
29137331 tccttcataccaacttcacccaaaatagatacatgaaaagtagccatcttttcatgatatgatatcaatgcaatggacaaatttaacaccaccaagttta 29137232  T
182 tccac 186  Q
    |||||    
29137231 tccac 29137227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 25520027 - 25520113
Alignment:
98 cacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 185  Q
    |||| |||||||||||||||||| || || | | |||||||| ||||||||| |||||||||| ||| |||||  |||| ||||||||    
25520027 cacctaaaattgatatgtgaaaa-taatcatattttcatgatgtgagatcaacgcaatggacctatttaacaccaccaattttatcca 25520113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 19697525 - 19697569
Alignment:
106 attgatatgtgaaaattagtcgtgtcttcatgatatgagatcaat 150  Q
    ||||||||||||||| ||||||| || |||||| |||||||||||    
19697525 attgatatgtgaaaagtagtcgtctcatcatgaaatgagatcaat 19697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 25319361 - 25319437
Alignment:
105 aattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagttta 181  Q
    |||||||| ||||||| ||||| | | |||||||||||||||||| ||||   ||||||| |||||  |||||||||    
25319361 aattgatacgtgaaaagtagtcatcttttcatgatatgagatcaaagcaacatacccatttaacaccaccaagttta 25319437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 25528826 - 25528950
Alignment:
62 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggaccc 161  Q
    |||||||| || ||||| | ||||| ||| ||  |||| | ||||||||||||||| || ||||  | | |||||||||| ||||||| ||||||||||     
25528826 tgaagagtatgttccaccattccttcatatcagcttcatctaaaattgatatgtgataagtagttatattttcatgatattagatcaaagcaatggacct 25528925  T
162 attaaacacagccaagtttatccac 186  Q
    |||  ||||  |||| |||||||||    
25528926 atttgacaccaccaaatttatccac 25528950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 26149054 - 26149130
Alignment:
105 aattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagttta 181  Q
    |||||||| ||||||| ||||| | | |||||||||||||||||| ||||   ||||||| |||||  |||||||||    
26149054 aattgatacgtgaaaagtagtcatcttttcatgatatgagatcaaagcaacatacccatttaacaccaccaagttta 26149130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42446467 - 42446242
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    ||||||||||||||| | || ||| |||||||||||||||| |||  ||||  ||||||||||| |||||||||||| || ||||| ||| ||  |||||    
42446467 aatatttctcctttcatccccacttcgataggacgctcaacacaatgcaacggtccaacaatgacgagtttggtccatgattccttgatagcaagttcac 42446368  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatc 200  Q
    ||||||||||||||||||||  || ||| | ||||||| |||||||||| ||||||||| | || |||||| |||||||||||||| ||     || ||     
42446367 ccaaaattgatatgtgaaaa-aagccgtcttttcatgaaatgagatcaaggcaatggactcgtttaacacaaccaagtttatccacgattctccaacata 42446269  T
201 gaaacaatcatctaagtatgagggtat 227  Q
    ||||||| ||||||||| |||||||||    
42446268 gaaacaaccatctaagtctgagggtat 42446242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 16194 - 16400
Alignment:
22 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 121  Q
    ||||||||||||| |  ||||||||||||   ||||| | ||||||| ||| |||| || |||||  |||||  |||||||||||||||||||||||||     
16194 actccgataggacacctaacgcaagacaatggtccaatagtgaagagattgatccatgattccttcttaccaatttcacccaaaattgatatgtgaaaag 16293  T
122 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatga 221  Q
    ||||| |   ||||||||| ||||||||||||||| || |||| |||   ||||||||||||||  |||  | || ||| |||||||||||||||| |||    
16294 tagtccttggttcatgataagagatcaatgcaatgcactcatttaaccgtgccaagtttatccatgatgcttcaacatcaaaacaatcatctaagtttga 16393  T
222 gggtatg 228  Q
    |||||||    
16394 gggtatg 16400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 327 - 100
Alignment:
1 aatatttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcac 100  Q
    |||| ||| ||||| || || ||||||||||||  |||||||||||||||   ||||| | ||||| | |||||||| || || ||  | |||  |||||    
327 aataattccccttttttccccactccgataggaaactcaacgcaagacaatggtccaatagtgaagtgattggtccatgattcattctttccaatttcac 228  T
101 ccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatc 200  Q
    |||||||||||||||||||| ||||| |   | ||||||| ||||||||||||||| || |||| |||   ||||||||||||||  |||  | || |||    
227 ccaaaattgatatgtgaaaagtagtccttggtacatgataagagatcaatgcaatgcactcatttaaccatgccaagtttatccaggatgcttcaacatc 128  T
201 gaaacaatcatctaagtatgagggtatg 228  Q
     |||||||||||||||| ||||||||||    
127 aaaacaatcatctaagtttgagggtatg 100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 33418 - 33539
Alignment:
4 atttctcctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcaccca 103  Q
    ||||| |||||| | || |||| |||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| || ||   ||||||||    
33418 atttcccctttcgtccccactctgataggacgctcaacgcaagacaacggtccaacagtgaagagtttggtccacgattccttaatgccgagttcaccca 33517  T
104 aaattgatatgtgaaaattagt 125  Q
    |||||| ||||| |||| ||||    
33518 aaattgctatgtcaaaagtagt 33539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 39787 - 39890
Alignment:
22 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 121  Q
    ||||||||||||||||||||||||||||||  ||||||| | ||||||||| ||||||| ||||| || ||   |||||||||||||| ||||||||||     
39787 actccgataggacgctcaacgcaagacaacggtccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaag 39886  T
122 tagt 125  Q
    ||||    
39887 tagt 39890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 10546 - 10486
Alignment:
60 aatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaa 120  Q
    |||||||||||| ||||| |||||||| | ||||  |||||||||||||||||||||||||    
10546 aatgaagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaaa 10486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 33551 - 33650
Alignment:
55 ccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaa 154  Q
    |||| ||| |||||||| ||||| |||||||| | ||||  |||||||||||| || ||||||||| ||||| | ||| |||  | ||||||||||||||    
33551 ccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaaagtagtcatttctacatagtttgagatcaatgcaa 33650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 32643026 - 32642902
Alignment:
54 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgca 153  Q
    ||||||||||||||||||| |||| || ||||| | |    |||||| |||||||||||||| |||| ||| | | | ||| ||||||| |||||| |||    
32643026 tccaacaatgaagagtttgatccatgattccttcacagttaattcactcaaaattgatatgttaaaagtagccatttgttcttgatatgtgatcaacgca 32642927  T
154 atggacccattaaacacagccaagt 178  Q
    ||||| ||||| ||||| |||||||    
32642926 atggatccatttaacaccgccaagt 32642902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 42414063 - 42413999
Alignment:
54 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaa 118  Q
    ||||||||| |||||||| ||||| |||||||||| |||| |||| ||||||||||| |||||||    
42414063 tccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaa 42413999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 39724570 - 39724635
Alignment:
54 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaa 119  Q
    |||||||||||||||||| ||||| || || ||||||||   ||| ||||||||||||||||||||    
39724570 tccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgtgaaa 39724635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 15807722 - 15807783
Alignment:
58 acaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaa 119  Q
    ||||| |||||||||||||| ||||| || |  |||  ||||||||||||||||||||||||    
15807722 acaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 15807783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 42637357 - 42637425
Alignment:
62 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgt 130  Q
    |||||||||||||||| || ||||| |  ||   ||||||||||||||||||||||||| |||| ||||    
42637357 tgaagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaaagtagttgtgt 42637425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 5162519 - 5162455
Alignment:
56 caacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaa 120  Q
    ||||| ||||||||||| |||| || ||||| | ||||  |||||||||||||||||||||||||    
5162519 caacagtgaagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaaa 5162455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 368872 - 368801
Alignment:
54 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagt 125  Q
    ||||||||||||||||||| |||| || ||||| | ||||  |||||| | |||||||||||||||| ||||    
368872 tccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagt 368801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 7429022 - 7429075
Alignment:
96 ttcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaa 149  Q
    ||||||||||| ||||||||||||| ||||| | ||||||| |||||| |||||    
7429022 ttcacccaaaactgatatgtgaaaagtagtcttctcttcataatatgaaatcaa 7429075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 7488712 - 7488824
Alignment:
13 ttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgata 112  Q
    ||||| ||| ||| |||||||||  |||| ||||||||   ||||||| |||| |||||  |||| || || || | ||||  |||||||||||||||||    
7488712 ttcttccctcctctgataggacgtgcaacacaagacaatggtccaacattgaaaagttttttccatgattctttcacaccaatttcacccaaaattgata 7488811  T
113 tgtgaaaattagt 125  Q
    |||||||| ||||    
7488812 tgtgaaaagtagt 7488824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University