View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0981_low_1 (Length: 572)

Name: NF0981_low_1
Description: NF0981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0981_low_1
NF0981_low_1
[»] chr4 (7 HSPs)
chr4 (30-560)||(37659977-37660506)
chr4 (100-172)||(24970947-24971019)
chr4 (96-172)||(38868830-38868906)
chr4 (103-222)||(26683635-26683753)
chr4 (102-172)||(14193894-14193964)
chr4 (182-231)||(31917682-31917731)
chr4 (103-159)||(36363567-36363623)
[»] chr2 (4 HSPs)
chr2 (99-223)||(41311688-41311811)
chr2 (99-172)||(752198-752271)
chr2 (99-172)||(32838678-32838751)
chr2 (182-234)||(11091456-11091508)
[»] chr8 (6 HSPs)
chr8 (96-172)||(14955267-14955343)
chr8 (100-172)||(34496930-34497002)
chr8 (96-172)||(44711511-44711587)
chr8 (113-172)||(26797858-26797917)
chr8 (184-233)||(39082528-39082577)
chr8 (97-157)||(38967820-38967880)
[»] chr7 (10 HSPs)
chr7 (96-172)||(35720941-35721017)
chr7 (96-172)||(23797682-23797758)
chr7 (96-172)||(31188786-31188862)
chr7 (196-243)||(46683106-46683153)
chr7 (129-172)||(30824914-30824957)
chr7 (102-172)||(5000329-5000399)
chr7 (91-165)||(36595361-36595435)
chr7 (196-240)||(8903048-8903092)
chr7 (185-241)||(28084878-28084934)
chr7 (100-172)||(28299685-28299757)
[»] chr3 (5 HSPs)
chr3 (108-224)||(42983873-42983988)
chr3 (96-169)||(31375489-31375562)
chr3 (96-172)||(36473165-36473241)
chr3 (182-234)||(44417867-44417919)
chr3 (182-230)||(50037186-50037234)
[»] chr1 (10 HSPs)
chr1 (95-172)||(28765570-28765647)
chr1 (96-172)||(49899079-49899155)
chr1 (97-168)||(2571040-2571111)
chr1 (97-168)||(31366773-31366844)
chr1 (98-172)||(1411671-1411745)
chr1 (97-171)||(31963039-31963113)
chr1 (96-172)||(36995280-36995356)
chr1 (97-172)||(10483257-10483332)
chr1 (91-167)||(15646906-15646982)
chr1 (185-241)||(15647272-15647328)
[»] chr5 (7 HSPs)
chr5 (96-172)||(1863092-1863168)
chr5 (96-172)||(6539789-6539865)
chr5 (91-172)||(844794-844875)
chr5 (96-172)||(4462549-4462625)
chr5 (192-235)||(41384818-41384861)
chr5 (182-224)||(27695130-27695172)
chr5 (96-172)||(41174350-41174426)
[»] chr6 (2 HSPs)
chr6 (182-225)||(7703073-7703116)
chr6 (131-172)||(31535689-31535730)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 30 - 560
Target Start/End: Original strand, 37659977 - 37660506
Alignment:
Q  30 tctattacttagatcaccaagtttaattaaagtgaaatgataacaaatgtccttagactatttagtgcacttgttaagaagtttaaagaggaaattatgt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37659977 tctattacttagatcaccaagtttaattaaagtgaaatgataacaaatgtccttagattatttagtgcacttgttaagaagtttaaagaggaaattatgt 37660076  T
Q  130 tttggaaattatgcattaaacacattgaaaatttaaaaagtaannnnnnnnnacataaaatctataaattattttcatttttgaatcttt-aacaaatgt 228  Q
    |||||||||||| ||||||||   |||||||||||||||||||         |||||||||||||||||||||||||||||||||||||| || ||||||    
T  37660077 tttggaaattatacattaaacg--ttgaaaatttaaaaagtaatttttttctacataaaatctataaattattttcatttttgaatcttttaataaatgt 37660174  T
Q  229 cctaagaacacttatcggcaagagttttgattaaatttgttgtacgaccatctttatcattcgtcaacattgtcatgatgaaaaggctattactatttac 328  Q
    |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37660175 cctaagaacacttatcggtaagagttttgattaaatttgttgtcagaccatctttatcattcgtcgacattgtcatgatgaaaaggctattactatttac 37660274  T
Q  329 tagttctaatagcctagtactannnnnnncttggcacaactagtctagatttaataaagcatgtcataggatttaaagaaaatatgcataattttcttc- 427  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||     
T  37660275 tagttctaatagcctagtactatttttttcttggcacaactagtctagatttaataaagcatgtcata-gatttaaagaaaatatgcataagtttcttct 37660373  T
Q  428 nnnnnnnnctcttagcgtaattttgaattttattttgatcctttaacaaaacaaaatgttattttcatcctttaagttatggatgtgttcatgttagttc 527  Q
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37660374 ttttttttctcttagcgtaattttgaattttattttgaccctttaacaaaacaaaatgttattttcatcctttaagttatggacgtgttcatgttagttc 37660473  T
Q  528 ttctcatccattctatcagtcaaagttaatatt 560  Q
    ||||| |||||||||||||||||| ||||||||    
T  37660474 ttctcttccattctatcagtcaaacttaatatt 37660506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 24970947 - 24971019
Alignment:
Q  100 ttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||||||||||||||||||||| ||| ||| |||| ||| ||||| |||||||||| ||||||||||||    
T  24970947 ttgttaagaagtttaaagaggaaattttgtcttgaaaatgatgtattaagcacattgaaagtttaaaaagtaa 24971019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 38868830 - 38868906
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||||||||| | ||||||||||||| ||| |||| ||| ||||||| |||||||||||| ||||||||||||    
T  38868830 gcacttgttaagaaatctaaagaggaaattttgtcttgggaatgatgcattcaacacattgaaagtttaaaaagtaa 38868906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 26683753 - 26683635
Alignment:
Q  103 ttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaannnnnnnnnacataaaatctataaattatt 202  Q
    ||||||||| ||||  |||| || ||| ||| |||| ||||||| || ||||||||||||||||||||||         ||||||||| |||||||||||    
T  26683753 ttaagaagtctaaaagggaagttttgtcttgaaaataatgcattcaagacattgaaaatttaaaaagtaa-tattttctacataaaatttataaattatt 26683655  T
Q  203 ttcatttttgaatctttaac 222  Q
    | ||||||| |||| |||||    
T  26683654 tccatttttaaatccttaac 26683635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 14193964 - 14193894
Alignment:
Q  102 gttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||||||||||| ||||| || | | | |||||| ||||||| || ||||||||| ||||||||||||    
T  14193964 gttaagaagtttaaaaaggaagttttatctcggaaatgatgcattcaagacattgaaagtttaaaaagtaa 14193894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 31917682 - 31917731
Alignment:
Q  182 acataaaatctataaattattttcatttttgaatctttaacaaatgtcct 231  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| ||||||    
T  31917682 acataaaatttataaattatatttatttttgaatccttaacaagtgtcct 31917731  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 36363567 - 36363623
Alignment:
Q  103 ttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaa 159  Q
    |||| ||||||||||| |||||| |||||||| | | ||||||| ||||||||||||    
T  36363567 ttaaaaagtttaaagaagaaattttgttttgggattgatgcattcaacacattgaaa 36363623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 41311688 - 41311811
Alignment:
Q  99 cttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaannnnnnnnnacataaaatctataaat 198  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||| |||| ||||||| ||||||||||||         ||||||||| |||||||    
T  41311688 cttgttaagaagtttaaagagaaaattttgttttgaaaattatgcatttaacaaattgaaagtttaaaaagtaa-ttttttctacataaaatttataaat 41311786  T
Q  199 tattttcatttttgaatctttaaca 223  Q
     |||| |||||||||||| ||||||    
T  41311787 catttacatttttgaatccttaaca 41311811  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 752271 - 752198
Alignment:
Q  99 cttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||||||||| |||||| |||||| ||| |||| | | ||||||| |||||||||||| || |||||||||    
T  752271 cttgttaagaagtctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaaaagtaa 752198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 32838751 - 32838678
Alignment:
Q  99 cttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||||||  ||||||| |||||| ||| |||||||| ||||||| ||  |||||||| ||||||| ||||    
T  32838751 cttgttaagaaaattaaagaagaaattttgtcttggaaatgatgcattcaatgcattgaaactttaaaatgtaa 32838678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 11091508 - 11091456
Alignment:
Q  182 acataaaatctataaattattttcatttttgaatctttaacaaatgtcctaag 234  Q
    ||||||||| ||| ||||||||| ||||| ||||||||||||| |||| ||||    
T  11091508 acataaaatttattaattatttttattttagaatctttaacaagtgtcttaag 11091456  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 14955343 - 14955267
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||||||||| |||||||||||| || | | |||||||| ||||||| |||||||||||| ||||||||||||    
T  14955343 gcacttgttaagaattttaaagaggaagttttatcttggaaatgatgcattcaacacattgaaagtttaaaaagtaa 14955267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 34497002 - 34496930
Alignment:
Q  100 ttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||||||||||||||| |||||| ||| ||| |||||||| ||| ||  |||||||| |||| |||||||    
T  34497002 ttgttaagaagtttaaagaagaaattttgtcttgtaaattatgtattcaatgcattgaaactttataaagtaa 34496930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 44711587 - 44711511
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||||||||||||||||| || ||||| | |||||| ||| ||  ||| |||||||| ||| ||||||||||||    
T  44711587 gcacttgttaagaagtttaaaaagaaaattttattttgggaatgatatattcaacacattaaaagtttaaaaagtaa 44711511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 26797858 - 26797917
Alignment:
Q  113 taaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||| ||||| |||||||||| | ||||||| |||||||| ||| ||||||||||||    
T  26797858 taaagagaaaattttgttttggaactgatgcatttaacacattaaaagtttaaaaagtaa 26797917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 39082528 - 39082577
Alignment:
Q  184 ataaaatctataaattattttcatttttgaatctttaacaaatgtcctaa 233  Q
    ||||||| ||| |||||||||| |||||||||||||||||| || |||||    
T  39082528 ataaaatttatcaattattttcctttttgaatctttaacaagtgccctaa 39082577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 38967820 - 38967880
Alignment:
Q  97 cacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattga 157  Q
    |||||||||||||||||||||| |||||| | | | |||||| ||||||| |||| |||||    
T  38967820 cacttgttaagaagtttaaagaagaaattttatctcggaaataatgcattcaacatattga 38967880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 35720941 - 35721017
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||||||||||||||||| || ||||| | |||||| ||| ||||||| |||| ||||||| ||||||||||||    
T  35720941 gcacttgttaagaagtttaaaaagaaaattttattttgggaatgatgcattcaacatattgaaagtttaaaaagtaa 35721017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 23797682 - 23797758
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||||||||||||||||||| ||||| | | |||| ||| ||| ||| || ||||| ||||||||||||||||    
T  23797682 gcacttgttaagaagtttaaagagaaaattttatcttgggaatgatgtattcaatacattaaaaatttaaaaagtaa 23797758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 31188862 - 31188786
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||| ||||||||||||||| ||||| || ||| ||| |||| ||||||| || ||||||||| ||||||||||||    
T  31188862 gcactagttaagaagtttaaaaaggaagttttgtcttgaaaatgatgcattcaagacattgaaagtttaaaaagtaa 31188786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 46683106 - 46683153
Alignment:
Q  196 aattattttcatttttgaatctttaacaaatgtcctaagaacacttat 243  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||||    
T  46683106 aattatttccatttttgcatctttaacaaatgccctaagaacacttat 46683153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 30824914 - 30824957
Alignment:
Q  129 ttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||    
T  30824914 ttttggaaatgatgtattcaacacattgaaaatttaaaaagtaa 30824957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 5000329 - 5000399
Alignment:
Q  102 gttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||||| ||||  |||| || ||| |||||||| ||||||| || ||||||||| ||||||||||||    
T  5000329 gttaagaagtctaaaatggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaa 5000399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 36595361 - 36595435
Alignment:
Q  91 ttagtgcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaa 165  Q
    |||| |||||| || |||||| ||||||||||||| ||| |||||||| ||||||| || ||||| ||| |||||    
T  36595361 ttagggcacttctttagaagtctaaagaggaaattttgtcttggaaatgatgcattcaaaacattaaaagtttaa 36595435  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 8903048 - 8903092
Alignment:
Q  196 aattattttcatttttgaatctttaacaaatgtcctaagaacact 240  Q
    |||| |||| ||||||||||||||||||| ||||||||| |||||    
T  8903048 aattgtttttatttttgaatctttaacaagtgtcctaaggacact 8903092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 28084878 - 28084934
Alignment:
Q  185 taaaatctataaattattttcatttttgaatctttaacaaatgtcctaagaacactt 241  Q
    |||||| ||| ||||||||  |||||||||| ||||||||||||||| | |||||||    
T  28084878 taaaatttatcaattatttatatttttgaatttttaacaaatgtccttataacactt 28084934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 28299685 - 28299757
Alignment:
Q  100 ttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||| |||||||||||  ||||| |||||| ||||| ||||||| ||   ||||||| ||||||||||||    
T  28299685 ttgttaaaaagtttaaagaataaattttgttttagaaatgatgcatttaatgtattgaaattttaaaaagtaa 28299757  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 42983873 - 42983988
Alignment:
Q  108 aagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaannnnnnnnnacataaaatctataaattattttcat 207  Q
    |||| ||||||| ||||| | ||||| |||| ||||||| |||||||||||||||||||||||||         ||||||||| ||||||| |||| |||    
T  42983873 aagtctaaagagaaaattttattttgaaaataatgcatttaacacattgaaaatttaaaaagtaa-ctttgactacataaaatttataaatcatttccat 42983971  T
Q  208 ttttgaatctttaacaa 224  Q
    ||||||||| |||||||    
T  42983972 ttttgaatcattaacaa 42983988  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 31375489 - 31375562
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaag 169  Q
    ||||||||| |||||| |||| | |||||| | | ||||||||| || ||| |||||||||||| |||||||||    
T  31375489 gcacttgtttagaagtctaaataagaaattttttcttggaaattgtgtattcaacacattgaaactttaaaaag 31375562  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 36473241 - 36473165
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||| ||||||||||| ||| ||||| || ||| | |||||| ||||||| || |||||||||  |||||||||||    
T  36473241 gcactagttaagaagttaaaaaaggaagttttgtctaggaaatgatgcattcaagacattgaaagattaaaaagtaa 36473165  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 44417919 - 44417867
Alignment:
Q  182 acataaaatctataaattattttcatttttgaatctttaacaaatgtcctaag 234  Q
    ||||||| | ||| ||||||||| ||||||||||| ||||||| |||||||||    
T  44417919 acataaagtttattaattatttttatttttgaatcattaacaagtgtcctaag 44417867  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 50037234 - 50037186
Alignment:
Q  182 acataaaatctataaattattttcatttttgaatctttaacaaatgtcc 230  Q
    ||||||||| ||| |||||||| | |||||||||||||||| |||||||    
T  50037234 acataaaatttatcaattatttccttttttgaatctttaactaatgtcc 50037186  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 28765647 - 28765570
Alignment:
Q  95 tgcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||||||| |||||||||||| ||||| ||  || ||||| ||| ||| |||||||||||| ||||||||||||    
T  28765647 tgcacttgttaaaaagtttaaagagaaaattttgccttagaaatgatgtattcaacacattgaaagtttaaaaagtaa 28765570  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 49899155 - 49899079
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||||||| |||| |||||  |||| | |||||||||||| ||||||| |||||||||||| ||| ||||||||    
T  49899155 gcacttgttaaaaagtctaaagcagaaactttgttttggaaatgatgcattcaacacattgaaattttgaaaagtaa 49899079  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 2571111 - 2571040
Alignment:
Q  97 cacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaa 168  Q
    |||||||||||||||||||| |||||||| | | |||| ||| ||| ||| |||||||||||| ||||||||    
T  2571111 cacttgttaagaagtttaaaaaggaaattttatcttgggaatgatgtattcaacacattgaaactttaaaaa 2571040  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 31366773 - 31366844
Alignment:
Q  97 cacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaa 168  Q
    ||||||||||||||| ||| |||| | || ||||||| |||| ||||||| |||||||||||||||| ||||    
T  31366773 cacttgttaagaagtctaatgagggagttttgttttgaaaatgatgcattcaacacattgaaaattttaaaa 31366844  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 1411671 - 1411745
Alignment:
Q  98 acttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||||||||||||||| |||||||| | | || | ||| ||| ||| |||||||||||| ||||||||||||    
T  1411671 acttgttaagaagtttaaaaaggaaattttatcttaggaatgatgtattcaacacattgaaagtttaaaaagtaa 1411745  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 31963113 - 31963039
Alignment:
Q  97 cacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagta 171  Q
    |||||| |||||||||||||  ||||||| |||||||||| || || ||| ||||||||||||  ||||||||||    
T  31963113 cacttgataagaagtttaaaatggaaattttgttttggaatttgtgtattcaacacattgaaacattaaaaagta 31963039  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 36995356 - 36995280
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||||||||||||  ||||| |||||| ||||||||||||  |||||| ||  |||||||| |||| |||||||    
T  36995356 gcacttgttaagaagtccaaagaagaaattttgttttggaaatggtgcattcaatgcattgaaattttataaagtaa 36995280  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 10483257 - 10483332
Alignment:
Q  97 cacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||||| |  |||||||||||| || |||||| ||||| ||||||| || ||||||||| ||| ||||||||    
T  10483257 cacttgttaaaacatttaaagaggaagttttgttttagaaatgatgcatttaatacattgaaagttttaaaagtaa 10483332  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 15646906 - 15646982
Alignment:
Q  91 ttagtgcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaa 167  Q
    |||| ||||||||||| ||| ||||||| |||||| ||| ||||||||  |||||| ||  |||||||| |||||||    
T  15646906 ttagggcacttgttaaaaagattaaagaagaaattttgtcttggaaatggtgcattgaatgcattgaaactttaaaa 15646982  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 15647272 - 15647328
Alignment:
Q  185 taaaatctataaattattttcatttttgaatctttaacaaatgtcctaagaacactt 241  Q
    |||||| |||||||||||| |||||||| |||  |||| ||||||||||| ||||||    
T  15647272 taaaatttataaattatttccatttttgcatccctaactaatgtcctaaggacactt 15647328  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 1863092 - 1863168
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||||||||||||||||| |  ||||| | | |||||||| ||| ||| |||||||||||| ||||||||||||    
T  1863092 gcacttgttaagaagtttaaaaaataaattttatcttggaaatgatgtattcaacacattgaaagtttaaaaagtaa 1863168  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 6539789 - 6539865
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||| ||||||||||||||| | ||| || ||||||| |||| ||||||| || ||||||||| ||||||||||||    
T  6539789 gcactagttaagaagtttaaaaatgaagttttgttttgaaaatgatgcattcaagacattgaaagtttaaaaagtaa 6539865  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 844875 - 844794
Alignment:
Q  91 ttagtgcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||| ||||||| |||||||||||||| || |||| | |||||||| || || ||| ||||||||||||  |||||||||||    
T  844875 ttagggcacttgataagaagtttaaagtggtaattctattttggaagttgtgtattcaacacattgaaacattaaaaagtaa 844794  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 4462549 - 4462625
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||| |||||||||||| || ||||| || ||| |||||||| ||||||| || | ||||||| ||||||||||||    
T  4462549 gcactagttaagaagttttaaaaggaagttttgtcttggaaatgatgcattcaagatattgaaagtttaaaaagtaa 4462625  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 41384818 - 41384861
Alignment:
Q  192 tataaattattttcatttttgaatctttaacaaatgtcctaaga 235  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||    
T  41384818 tataaattatttctatttttgaatccttaacaaatgtcctaaga 41384861  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 27695172 - 27695130
Alignment:
Q  182 acataaaatctataaattattttcatttttgaatctttaacaa 224  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||    
T  27695172 acataaaatttattaattattttcatttttgaatccttaacaa 27695130  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 41174426 - 41174350
Alignment:
Q  96 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    ||||||| ||||||| |||||| |||| || | | |||||| || |||||| ||||||||||||  |||||||||||    
T  41174426 gcacttgataagaagcttaaagtggaagttttatcttggaagttgtgcatttaacacattgaaatattaaaaagtaa 41174350  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 7703073 - 7703116
Alignment:
Q  182 acataaaatctataaattattttcatttttgaatctttaacaaa 225  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||    
T  7703073 acataaaatttatcaattatttttatttttgaatctttaacaaa 7703116  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 31535689 - 31535730
Alignment:
Q  131 ttggaaattatgcattaaacacattgaaaatttaaaaagtaa 172  Q
    |||||||| ||||||| |||||||||||| ||||||||||||    
T  31535689 ttggaaatgatgcatttaacacattgaaagtttaaaaagtaa 31535730  T

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