View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0981_low_3 (Length: 251)

Name: NF0981_low_3
Description: NF0981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0981_low_3
NF0981_low_3
[»] chr4 (7 HSPs)
chr4 (32-244)||(9593409-9593622)
chr4 (9-132)||(9606067-9606190)
chr4 (26-244)||(9602199-9602424)
chr4 (43-209)||(9569616-9569780)
chr4 (13-251)||(9581610-9581836)
chr4 (13-251)||(9587305-9587531)
chr4 (194-251)||(9569416-9569473)
[»] chr7 (1 HSPs)
chr7 (122-244)||(42446568-42446690)
[»] chr6 (3 HSPs)
chr6 (146-244)||(32740480-32740578)
chr6 (139-244)||(29131539-29131643)
chr6 (120-244)||(29145527-29145651)
[»] scaffold0054 (2 HSPs)
scaffold0054 (180-243)||(39601-39664)
scaffold0054 (180-243)||(33250-33313)
[»] chr5 (1 HSPs)
chr5 (208-241)||(43323021-43323054)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 9593409 - 9593622
Alignment:
Q  32 cagatgagccaaaaacagaaggacataagcatcagcaacgatacaaggataatggcccgctacagattcaatcaatctccgaga-ttctaattgacaaga 130  Q
    ||||||||| ||||||| ||  |||||||||| |||||| |||||||||||||| |||||||| ||||||| ||||||| | || ||| |||||||||||    
T  9593409 cagatgagcaaaaaacaaaaccacataagcatgagcaacaatacaaggataatgacccgctaccgattcaagcaatctcagggaattccaattgacaaga 9593508  T
Q  131 cacttcgcatacaatgtaatatcccaatggccacaatcattttgctccaggtgaaaacaagaaaaataactaaatacttattcctccaattggaagaatg 230  Q
    ||||| |||||||| ||||||| |||||  |||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  9593509 cactttgcatacaaggtaatattccaatcaccacgatcattttgctcctggtgaaaacaaggaaaataactaattacttattcctccaattggaagaatg 9593608  T
Q  231 ttttccttgtatat 244  Q
    ||||||||||||||    
T  9593609 ttttccttgtatat 9593622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 9606067 - 9606190
Alignment:
Q  9 accacagaccagaaaagcagcaacagatgagccaaaaacagaaggacataagcatcagcaacgatacaaggataatggcccgctacagattcaatcaatc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  9606067 accacagaccagaaaagcagcaacagatgagccaaaaacagaaggacataagcatcagcaacgatacaaggataatggctcgctaccgattcaagcaatc 9606166  T
Q  109 tccgagattctaattgacaagaca 132  Q
    ||||||||||||||||||||||||    
T  9606167 tccgagattctaattgacaagaca 9606190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 244
Target Start/End: Original strand, 9602199 - 9602424
Alignment:
Q  26 cagcaacagatgagccaaaaacagaaggacataagcatcagcaacgatacaaggataatggcccgctacagattcaatcaatctccgagattctaattga 125  Q
    ||||| ||||||||||||||||| ||  | ||| |||||||| |||||||||||||||||||||||||| |||| ||  |||||||| | ||| ||||||    
T  9602199 cagcaccagatgagccaaaaacaaaaccatatatgcatcagcgacgatacaaggataatggcccgctaccgatttaagaaatctccggggttccaattga 9602298  T
Q  126 caagacacttcgcatacaatgtaatatcccaatggccacaat-------cattttgctccaggtgaaaacaagaaaaataactaaatacttattcctcca 218  Q
    |||||||||| |||||||| |||||||||||||  |  ||||       ||||||||||| |||||||||||||||||||||||| |||||||||||||     
T  9602299 caagacactttgcatacaaggtaatatcccaatcactgcaatcattttgcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccg 9602398  T
Q  219 attggaagaatgttttccttgtatat 244  Q
    ||||||||||||||||||||||||||    
T  9602399 attggaagaatgttttccttgtatat 9602424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 9569780 - 9569616
Alignment:
Q  43 aaaacagaaggacataagcatcagcaacgatacaaggataatggcccgctacagattcaatcaatctccgagattctaattgacaagacacttcgcatac 142  Q
    |||||||||  |||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||  |||||  |  |||||||||||| ||||||    
T  9569780 aaaacagaaccacataagcatcagcgacgatacaaggataatggcccgctaccgattaaagcaatctccaggattccta--gacaagacactttgcatac 9569683  T
Q  143 aatgtaatatcccaatggccacaatcattttgctccaggtgaaaacaagaaaaataactaaatactt 209  Q
    || |||||||||||||  ||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  9569682 aaggtaatatcccaatcaccacaatcattttgctcctcgtgaaaacaagaaaaataactaattactt 9569616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 9581610 - 9581836
Alignment:
Q  13 cagaccagaaaagcagcaacagatgagccaaaaacagaaggacataagcatcagcaacgatacaaggataatggcccgctacagattcaatcaatctccg 112  Q
    |||||||||||| ||||| |||||||||||||| |||||  ||| || ||||||| |||||||||||| ||||||| ||||| ||||||| | ||||| |    
T  9581610 cagaccagaaaa-cagcaccagatgagccaaaa-cagaaccacagaatcatcagcgacgatacaaggacaatggcctgctaccgattcaagcgatctctg 9581707  T
Q  113 agattctaattgacaagacacttcgcatacaatgtaatatcccaatggccacaatcattttgctccaggtgaaaacaagaaaaataactaaatacttatt 212  Q
      |||| |||||||||||||||| | ||| || |||||||||||||  ||||||||||||| |||| |||         |||||||||||| ||||||||    
T  9581708 gaattcaaattgacaagacactttgtatataaggtaatatcccaatcaccacaatcattttactcctggt---------aaaaataactaattacttatt 9581798  T
Q  213 cctccaattggaagaatgttttccttgtatatgactatc 251  Q
    |||||||||||||||||| |||||||||| || ||||||    
T  9581799 cctccaattggaagaatg-tttccttgtacattactatc 9581836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 9587305 - 9587531
Alignment:
Q  13 cagaccagaaaagcagcaacagatgagccaaaaacagaaggacataagcatcagcaacgatacaaggataatggcccgctacagattcaatcaatctccg 112  Q
    |||||||||||| ||||| |||||||||||||| |||||  ||| || ||||||| |||||||||||| ||||||| ||||| ||||||| | ||||| |    
T  9587305 cagaccagaaaa-cagcaccagatgagccaaaa-cagaaccacagaatcatcagcgacgatacaaggacaatggcctgctaccgattcaagcgatctctg 9587402  T
Q  113 agattctaattgacaagacacttcgcatacaatgtaatatcccaatggccacaatcattttgctccaggtgaaaacaagaaaaataactaaatacttatt 212  Q
      |||| |||||||||||||||| | ||| || |||||||||||||  ||||||||||||| |||| |||         |||||||||||| ||||||||    
T  9587403 gaattcaaattgacaagacactttgtatataaggtaatatcccaatcaccacaatcattttactcctggt---------aaaaataactaattacttatt 9587493  T
Q  213 cctccaattggaagaatgttttccttgtatatgactatc 251  Q
    |||||||||||||||||| |||||||||| || ||||||    
T  9587494 cctccaattggaagaatg-tttccttgtacattactatc 9587531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 9569473 - 9569416
Alignment:
Q  194 aaataactaaatacttattcctccaattggaagaatgttttccttgtatatgactatc 251  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||    
T  9569473 aaataactaattacttattcctccaattggaagaatattttccttgtatattactatc 9569416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 244
Target Start/End: Complemental strand, 42446690 - 42446568
Alignment:
Q  122 ttgacaagacacttcgcatacaatgtaatatcccaatggccacaatcattttgctccaggtgaaaacaagaaaaataactaaatacttattcctccaatt 221  Q
    ||||||||  |||| | |||||| |||||||| |||   |||||||||| |  |||  ||||||||||||||||| || ||| || ||||||||||||||    
T  42446690 ttgacaagggactttgtatacaaggtaatatctcaagaaccacaatcatatacctcttggtgaaaacaagaaaaacaattaattaattattcctccaatt 42446591  T
Q  222 ggaagaatgttttccttgtatat 244  Q
    |||||||||||||||||||||||    
T  42446590 ggaagaatgttttccttgtatat 42446568  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 32740480 - 32740578
Alignment:
Q  146 gtaatatcccaatggccacaatcattttgctccaggtgaaaacaagaaaaataactaaatacttattcctccaattggaagaatgttttccttgtatat 244  Q
    |||||||||||||| ||  ||||||||| ||||  |||||||||||||||| |||||| ||||| ||||||||||| ||||||| || |||| ||||||    
T  32740480 gtaatatcccaatgaccgaaatcattttcctcccagtgaaaacaagaaaaaaaactaattacttgttcctccaatttgaagaatattatcctcgtatat 32740578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 29131643 - 29131539
Alignment:
Q  139 atacaatgtaatatcccaatggccacaatcattttgctccaggtgaaaacaagaaaaataactaaatacttattcctccaattggaagaatgttttcctt 238  Q
    |||||| |||||| ||||||| || |||||||||| ||||  ||||||||| ||| || |||||  ||||| |||||||||||||||||||||| |||||    
T  29131643 atacaaggtaatagcccaatgaccgcaatcattttcctcccagtgaaaacaggaagaa-aactacttacttgttcctccaattggaagaatgttatcctt 29131545  T
Q  239 gtatat 244  Q
    ||||||    
T  29131544 gtatat 29131539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 29145651 - 29145527
Alignment:
Q  120 aattgacaagacacttcgcatacaatgtaatatcccaatggccacaatcattttgctccaggtgaaaacaagaaaaataactaaatacttattcctccaa 219  Q
    |||||||||  || || ||||| ||||||||||| |||   |||||||||| |  |||  ||||| ||||||||||| || ||  |||||  ||||||||    
T  29145651 aattgacaaaccagtttgcataaaatgtaatatctcaacaaccacaatcatatacctcttggtgataacaagaaaaacaattagctacttgctcctccaa 29145552  T
Q  220 ttggaagaatgttttccttgtatat 244  Q
    |||||||||||| ||||||||||||    
T  29145551 ttggaagaatgtattccttgtatat 29145527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 39601 - 39664
Alignment:
Q  180 ggtgaaaacaagaaaaataactaaatacttattcctccaattggaagaatgttttccttgtata 243  Q
    |||||||||||||||||||| ||| ||||||||||| |||||  ||||||||||||||||||||    
T  39601 ggtgaaaacaagaaaaataattaattacttattccttcaattacaagaatgttttccttgtata 39664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 33250 - 33313
Alignment:
Q  180 ggtgaaaacaagaaaaataactaaatacttattcctccaattggaagaatgttttccttgtata 243  Q
    |||||||||| ||||||||| ||| ||||||||||| |||| | ||||||||||||||||||||    
T  33250 ggtgaaaacatgaaaaataattaattacttattccttcaatggcaagaatgttttccttgtata 33313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 43323054 - 43323021
Alignment:
Q  208 ttattcctccaattggaagaatgttttccttgta 241  Q
    ||||||||||||||||||| ||||||||||||||    
T  43323054 ttattcctccaattggaagcatgttttccttgta 43323021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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