View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0982_low_3 (Length: 643)
Name: NF0982_low_3
Description: NF0982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0982_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 7 - 546
Target Start/End: Complemental strand, 17408070 - 17407531
Alignment:
| Q |
7 |
tccaacaaaatcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatattcaacttcaaca |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17408070 |
tccaccaaaatcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatactcaacttcaaca |
17407971 |
T |
|
| Q |
107 |
actttatcactttttatcctattgctcttaatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407970 |
actttatcactttttatcctattgctcttaatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgt |
17407871 |
T |
|
| Q |
207 |
taaagtttttcgcatatgattcgaggtaacttatgaactgaaattttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407870 |
taaagtttttcgcatatgattcgaggtaacttatgaactgaaattttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaa |
17407771 |
T |
|
| Q |
307 |
ttgtttagggaggtgaagtttaagacgatcgtaggttcgattctgccaaagcgaagcaatgcagttagctcgttcgaggacgacaaaaggaacattttgg |
406 |
Q |
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| T |
17407770 |
ttgtttaggaagatgaagtttaagacgatcgtaggttcgattctgccaaagcgaggcaatgcagttagctcgttcgaggacgacaaaaggaacattttgg |
17407671 |
T |
|
| Q |
407 |
tccttaagacaagctgcaactgctaagcctgatggaccagctccaactataacaggtccattcactaatatgcaacggtttttgagaatgtcttcggggt |
506 |
Q |
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| T |
17407670 |
tctttcaaacaagctgcaactgctaagcctgatggaccagctccaactataacaggtccattcactaatatgcaacggtttttgagaatgtcttcggggt |
17407571 |
T |
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| Q |
507 |
cgaatgtttgagacattggtggcatgtttagactaatgtt |
546 |
Q |
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| T |
17407570 |
cgaatgtttgagacattggtggcatgtttagactaatgtt |
17407531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 29857847 - 29857896
Alignment:
| Q |
278 |
gggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
327 |
Q |
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| T |
29857847 |
gggaatggaaagttaggtagttgacagaattgtttagggaggtgaagttt |
29857896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 29857640 - 29857684
Alignment:
| Q |
59 |
tcaccggtagcaaccacaagccacctacaaatatattcaacttca |
103 |
Q |
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| T |
29857640 |
tcaccagtagcaaccacaagcgacctacaaatatactcaacttca |
29857684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 39733577 - 39733624
Alignment:
| Q |
56 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
103 |
Q |
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||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39733577 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39733624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 39839381 - 39839334
Alignment:
| Q |
56 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
103 |
Q |
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||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39839381 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39839334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 39839210 - 39839134
Alignment:
| Q |
251 |
tttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
327 |
Q |
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|||||||||||||||||||| | ||||| | ||||| || ||||||||||| |||||||| || ||||||||||| |
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| T |
39839210 |
tttgaagggtattcagggaaatcttcaggcattggaaggttaggtagttgacagaattgttttggaaggtgaagttt |
39839134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 31290123 - 31290047
Alignment:
| Q |
251 |
tttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
327 |
Q |
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|||||||||||||||||||| | ||| | | ||||| || ||||||||||| ||| ||||||| ||||||||||| |
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| T |
31290123 |
tttgaagggtattcagggaaatcttcaagcattggaaggttaggtagttgacataatggtttaggaaggtgaagttt |
31290047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 467
Target Start/End: Complemental strand, 32789609 - 32789552
Alignment:
| Q |
410 |
ttaagacaagctgcaactgctaagcctgatggaccagctccaactataacaggtccat |
467 |
Q |
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|||||||| ||||| ||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
32789609 |
ttaagacatgctgctgctgctaatcctgagggaccagctccaactataattggtccat |
32789552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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