View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0982_low_4 (Length: 300)

Name: NF0982_low_4
Description: NF0982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0982_low_4
NF0982_low_4
[»] chr1 (1 HSPs)
chr1 (33-252)||(18943789-18944008)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 33 - 252
Target Start/End: Complemental strand, 18944008 - 18943789
Alignment:
Q  33 aaacttgttattctttgggtgcaactacagagactaatcactcgtcagataagacctctgtgaatgccaaaacatatttaaaactgctgcgtttctaacg 132  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18944008 aaacttgttatcctttgagtgcaactacagagactaatcgctcgtcagataagacctctgtgaatgccaaaacatatttaaaactgctgcatttctaacg 18943909  T
Q  133 ttagatttgaacccatacttgtaattaagcttaaaagatcatttgtcatctcattcagatgcttttggtaaacctgctctttgaaatgatggatcggaga 232  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  18943908 ttagatttgaacccatacctgtaattaagcttaaaagatcatttgtcatctcattcaaatgcttttggtaaacctgctcttggaaatgacggatcggaga 18943809  T
Q  233 agtacattttccttgtattt 252  Q
    ||||||||||||||||||||    
T  18943808 agtacattttccttgtattt 18943789  T

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