View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0983_low_2 (Length: 354)
Name: NF0983_low_2
Description: NF0983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0983_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 346
Target Start/End: Original strand, 1793700 - 1794018
Alignment:
| Q |
29 |
aaagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaaatagaacttatgagtcaggc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1793700 |
aaagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaaatagaacttatgagtcaggc |
1793799 |
T |
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| Q |
129 |
tcaatttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgccctttttgtacgaa |
228 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1793800 |
tcaatttagtgtagtagagtccttt-aatgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgtcctttttgtacgaa |
1793898 |
T |
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| Q |
229 |
cctcccccctttgatttttggatttgtaacaattgtgtgtaggcaggaca--tggagtagtctgtcgagttttaatatgctctatgtctctcttatgcat |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1793899 |
cctcccccctttgatttttggatttgtaacaattgtgtgtaggcacgacatgtgaagtagtctgtcgagttttaatatgctctatgtctctcttatgcat |
1793998 |
T |
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| Q |
327 |
actatctttccgcctatgat |
346 |
Q |
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||||||||||| ||| |||| |
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| T |
1793999 |
actatctttcctcctttgat |
1794018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 2007511 - 2007587
Alignment:
| Q |
30 |
aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac |
106 |
Q |
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| T |
2007511 |
aagtatttttttagtgcctttcaagttcccaatccagtattggaaattattttctaaaacttgtacacttgagttac |
2007587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 2007641 - 2007708
Alignment:
| Q |
132 |
atttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaata |
200 |
Q |
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| T |
2007641 |
atttagtgcagtagaaccctataaatcagagactcatgtatcttctttttcatc-tttatcaatcaata |
2007708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 2020712 - 2020788
Alignment:
| Q |
30 |
aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac |
106 |
Q |
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| T |
2020712 |
aagtatttgtttagtacatttaaagttcccagtttagtattggaagttagtttctaaaacttgtacacttgagttac |
2020788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 2012994 - 2013074
Alignment:
| Q |
29 |
aaagtatttgtctagtgccttt-caagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaa |
108 |
Q |
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| T |
2012994 |
aaagtatttgtttagtgccttttctagttcctaatctagtattggaagttagtttctaaaatttgtgcacttgagctacaa |
2013074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 2007731 - 2007807
Alignment:
| Q |
197 |
aatatactttttatctgccctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggca |
273 |
Q |
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| T |
2007731 |
aatatactttttatttttcctatgtatacaaaccttccccctttgatttatagatttgtaacaattgcatgtaggca |
2007807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 20954211 - 20954255
Alignment:
| Q |
293 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
337 |
Q |
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| T |
20954211 |
gagttttaatatgctctatgtccctcttatgcatactatctttcc |
20954255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 20935971 - 20936014
Alignment:
| Q |
293 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
337 |
Q |
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| T |
20935971 |
gagttttaatatgctctatgcct-tcttatgcatactatctttcc |
20936014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 39275112 - 39275156
Alignment:
| Q |
293 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
337 |
Q |
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| T |
39275112 |
gagttttaataggttatatgtctctcttatgcatacaatctttcc |
39275156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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