View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0984-Insertion-10 (Length: 387)

Name: NF0984-Insertion-10
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0984-Insertion-10
NF0984-Insertion-10
[»] chr6 (4 HSPs)
chr6 (8-387)||(33694653-33695031)
chr6 (156-387)||(12938663-12938893)
chr6 (190-354)||(28138039-28138201)
chr6 (229-313)||(14532047-14532131)
[»] chr3 (17 HSPs)
chr3 (159-387)||(12938425-12938652)
chr3 (156-387)||(50650358-50650588)
chr3 (190-381)||(31658792-31658981)
chr3 (159-316)||(33216690-33216848)
chr3 (170-303)||(29833310-29833444)
chr3 (159-221)||(53282176-53282238)
chr3 (160-221)||(36950290-36950351)
chr3 (159-221)||(29703668-29703730)
chr3 (275-330)||(36950179-36950234)
chr3 (159-219)||(5232829-5232889)
chr3 (159-219)||(20104205-20104265)
chr3 (275-331)||(29703556-29703612)
chr3 (159-217)||(39833366-39833424)
chr3 (275-328)||(5232946-5232999)
chr3 (275-354)||(39833230-39833307)
chr3 (275-331)||(53282294-53282350)
chr3 (275-328)||(20104322-20104375)
[»] chr5 (9 HSPs)
chr5 (159-387)||(1828436-1828663)
chr5 (159-387)||(40313901-40314128)
chr5 (159-387)||(41413409-41413636)
chr5 (156-387)||(30624885-30625115)
chr5 (159-316)||(31482104-31482262)
chr5 (159-221)||(39884578-39884640)
chr5 (275-331)||(39884696-39884752)
chr5 (159-217)||(24788459-24788517)
chr5 (275-381)||(24788296-24788400)
[»] chr4 (14 HSPs)
chr4 (156-387)||(27292967-27293197)
chr4 (156-387)||(4919036-4919265)
chr4 (190-381)||(42976386-42976575)
chr4 (282-372)||(45989591-45989679)
chr4 (159-221)||(15531343-15531405)
chr4 (275-381)||(28679508-28679612)
chr4 (282-380)||(42069019-42069115)
chr4 (275-381)||(55919359-55919463)
chr4 (275-331)||(15531231-15531287)
chr4 (159-217)||(20133293-20133351)
chr4 (159-220)||(24228276-24228337)
chr4 (275-354)||(20133410-20133487)
chr4 (282-360)||(47031452-47031528)
chr4 (159-213)||(55919526-55919580)
[»] chr2 (15 HSPs)
chr2 (156-387)||(14096277-14096507)
chr2 (262-328)||(18977134-18977200)
chr2 (160-221)||(33755202-33755263)
chr2 (160-221)||(7089108-7089169)
chr2 (159-219)||(37078830-37078890)
chr2 (275-330)||(7089225-7089280)
chr2 (275-381)||(15330735-15330839)
chr2 (275-381)||(37261669-37261773)
chr2 (159-217)||(17690487-17690545)
chr2 (275-328)||(37078947-37079000)
chr2 (275-381)||(14810087-14810191)
chr2 (275-381)||(16429864-16429968)
chr2 (275-381)||(17690604-17690708)
chr2 (275-330)||(33755091-33755146)
chr2 (159-217)||(16429747-16429805)
[»] chr7 (11 HSPs)
chr7 (160-387)||(19436697-19436923)
chr7 (155-310)||(29258407-29258563)
chr7 (156-387)||(29833911-29834141)
chr7 (282-372)||(6442633-6442721)
chr7 (159-219)||(29243263-29243323)
chr7 (275-381)||(45972423-45972527)
chr7 (159-217)||(45972306-45972364)
chr7 (275-328)||(47327942-47327995)
chr7 (286-377)||(34094118-34094207)
chr7 (159-219)||(47327825-47327885)
chr7 (275-354)||(29243380-29243455)
[»] chr1 (8 HSPs)
chr1 (156-387)||(27286185-27286415)
chr1 (171-373)||(39241594-39241792)
chr1 (156-384)||(52385783-52386010)
chr1 (275-381)||(12981521-12981625)
chr1 (282-372)||(45325616-45325704)
chr1 (275-381)||(45348240-45348344)
chr1 (159-217)||(12981404-12981462)
chr1 (170-217)||(45348403-45348450)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-157)||(85759-85895)
[»] chr8 (8 HSPs)
chr8 (159-316)||(13802715-13802873)
chr8 (160-221)||(3879599-3879660)
chr8 (275-330)||(3879488-3879543)
chr8 (170-219)||(30945584-30945633)
chr8 (226-328)||(23613575-23613678)
chr8 (159-217)||(531567-531625)
chr8 (275-381)||(531684-531788)
chr8 (275-354)||(30945452-30945527)
[»] scaffold0166 (2 HSPs)
scaffold0166 (159-217)||(30842-30900)
scaffold0166 (275-381)||(30679-30783)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 33694653 - 33695031
Alignment:
Q  8 cacttagtgtattgaaattcttccaaattctactactgttgtagcttggtttaaggctagtgatttagtttgctct-atatatatacgaggattatgtcg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| |    
T  33694653 cacttagtgtattgaaattcttccaaattctactactgttgtagcttggtttaaggctagcgatttagtttgctcttagatatatacgaggattatgtgg 33694752  T
Q  107 ggtgatgtttgaaggtgagttttaaagtgatatgctagatacttttttcaattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||| | |||||    
T  33694753 ggtgatgtttgaaggtgagttttaaagtgatatgctagatacttttgtcaattgactttttcggtgaagtcgtttgaatggaccaatcagattttaagtg 33694852  T
Q  207 atgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttact 306  Q
    ||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |    
T  33694853 atgacacgttagataatggaaaaattttaatatggatcacttgctccatatgttccatcatagacaaatttatttcatgatcttaacagttagatttatt 33694952  T
Q  307 tggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 387  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33694953 tggcctctatattattgtgg--tacaccctctacatatgatttttcttataattccatttctctctcttctttatcactca 33695031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 12938663 - 12938893
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    |||||||||||| ||||||||||||| | |    ||||||||| | ||| |||||||||||||||  ||  ||||||| |||||||||||||||||| ||    
T  12938663 aattgacttttttagtgaagtcgtttaattcaaccaatcagattttaagcgatgacacgtcagatgttgggacaaattttaatatggatcacttgcttca 12938762  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||  |||| |||||| |||||||||  ||| ||||||||| ||||||||||||    
T  12938763 tatgttccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtgg--tacaccctctacacatgatttttctt 12938860  T
Q  355 ataattccatttctctctcttctttatcactca 387  Q
    ||  ||||| |||||| || |||||||||||||    
T  12938861 atttttccaattctctttcctctttatcactca 12938893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 354
Target Start/End: Complemental strand, 28138201 - 28138039
Alignment:
Q  190 caatcagatatcaagtgatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatct 289  Q
    |||||| || |||||| ||||||||||||||   | ||||||| ||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||    
T  28138201 caatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccatcatggacaagtttatttcatgatct 28138102  T
Q  290 taacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    |||  ||||||||||||||| ||||||||||||||||  |||| | |||||| ||||||||||||    
T  28138101 taaaggttagatttacttggtctctatattattgtgg--tacgtcatctacacatgatttttctt 28138039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 14532131 - 14532047
Alignment:
Q  229 aattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctc 313  Q
    |||||||||||| |  |||||||| ||||||| |||||| |||| ||||| |||| ||||||||  |||||||||  ||||||||    
T  14532131 aattctaatatgaacaacttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagatttgtttggcctc 14532047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 159 - 387
Target Start/End: Original strand, 12938425 - 12938652
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataat-gaacaaattctaatatggatcacttgctccatat 257  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||  | | ||||||| |||||||||||||||||| |||||    
T  12938425 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatat 12938524  T
Q  258 gttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttata 357  Q
    |||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| |||||||||  ||| |||| |||| |||||||||||||||    
T  12938525 gttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtgg--tacaccctttacacatgatttttcttata 12938622  T
Q  358 attccatttctctctcttctttatcactca 387  Q
    ||||||  |||||||| |||||||||||||    
T  12938623 attccaaatctctctcctctttatcactca 12938652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 156 - 387
Target Start/End: Complemental strand, 50650588 - 50650358
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| || ||||||||| | |  | ||||||||| |||||  ||||||||||||||  ||  |||||||||||||||||||||||| | ||    
T  50650588 aattgactttttcggtaaagtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttca 50650489  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| |||||| |||||||||  ||| ||||||||| ||||||||||||    
T  50650488 tatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtgg--tacaccctctacacatgatttttctt 50650391  T
Q  355 ataattccatttctctctcttctttatcactca 387  Q
    ||  ||||| |||||| || |||||||||||||    
T  50650390 atttttccaattctctttcctctttatcactca 50650358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 381
Target Start/End: Complemental strand, 31658981 - 31658792
Alignment:
Q  190 caatcagatatcaagtgatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatct 289  Q
    ||||||||| ||||| |||||||| ||| ||   | | ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||    
T  31658981 caatcagatttcaagagatgacacatcacatgtaggataaattctaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatct 31658882  T
Q  290 taacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttctttat 381  Q
    |||| ||||||||||||||| |||||| |||||||||  ||| || |||||| |||||||||||| ||||  || ||||||||| |||||||    
T  31658881 taacggttagatttacttggtctctatgttattgtgg--tacaccatctacacatgatttttcttctaatatcaattctctctcctctttat 31658792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 33216848 - 33216690
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtc--agataatgaacaaattctaatatggatcacttgctccata 256  Q
    |||||| ||| ||||||||||||||||| | ||||||||| | |||||||||||||||  |  ||||| ||||||| |||||||||||||||||||||||    
T  33216848 tgacttcttcggtgaagtcgtttgaatgagccaatcagattttaagtgatgacacgtcctaagtaatg-acaaattataatatggatcacttgctccata 33216750  T
Q  257 tgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 316  Q
    ||||||||||||||||  |||| |||||||||||||  |||||||||  |||||||||||    
T  33216749 tgttccaccatagacagatttacttcatgatcttaatggttagatttgtttggcctctat 33216690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 29833310 - 29833444
Alignment:
Q  170 gtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga--taatgaacaaattctaatatggatcacttgctccatatgttccaccat 267  Q
    |||||||||||||||||   ||||||||| | ||||||||||||||||||  ||| || |||||| ||||||||||||||||||||||||||||||||||    
T  29833310 gtgaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaagtaagga-caaattataatatggatcacttgctccatatgttccaccat 29833408  T
Q  268 agacaagtttatttcatgatcttaacagttagattt 303  Q
    |||||  |||| || ||||||||||  |||||||||    
T  29833409 agacagatttacttgatgatcttaatggttagattt 29833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 53282176 - 53282238
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    |||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  53282176 tgacttcttcggtgaagtcgtttgaatgggccaatcagatttcaagtgatgacacgtcagata 53282238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 36950351 - 36950290
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    ||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  36950351 gactttttcggtgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagata 36950290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 29703730 - 29703668
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    |||||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||| ||||    
T  29703730 tgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcggata 29703668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 36950234 - 36950179
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 330  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtata 36950179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 5232829 - 5232889
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||| ||| |||||||||| |||||||| ||||||||| | ||||||||||||||||||    
T  5232829 tgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcaga 5232889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 20104205 - 20104265
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||||||| ||||| |||||||||| || ||||||||| | ||||||||||||||||||    
T  20104205 tgactttttcggtgaaatcgtttgaataggccaatcagattttaagtgatgacacgtcaga 20104265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 29703612 - 29703556
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 29703556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 39833424 - 39833366
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  39833424 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 39833366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 5232946 - 5232999
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 5232999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 39833307 - 39833230
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| ||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttctt 39833230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 53282294 - 53282350
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    |||||||||| |||||||  ||||||||||||| | |||||| ||||||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggtatac 53282350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 20104322 - 20104375
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||||||||  ||||||||||||||  || ||| |||||||||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggta 20104375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 159 - 387
Target Start/End: Original strand, 1828436 - 1828663
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata--atgaacaaattctaatatggatcacttgctccata 256  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||   |||| |||||| |||||||||||||||||| ||||    
T  1828436 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttatga-caaattataatatggatcacttgcttcata 1828534  T
Q  257 tgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttat 356  Q
    ||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| |||||||||  ||| |||| |||| ||||||||||||||    
T  1828535 tgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtgg--tacaccctttacacatgatttttcttat 1828632  T
Q  357 aattccatttctctctcttctttatcactca 387  Q
    |||||||  |||||||| |||||||||||||    
T  1828633 aattccaaatctctctcctctttatcactca 1828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 159 - 387
Target Start/End: Original strand, 40313901 - 40314128
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataat-gaacaaattctaatatggatcacttgctccatat 257  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||  | | |||||||  ||||||||||||||||| |||||    
T  40313901 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggacaaattacaatatggatcacttgcttcatat 40314000  T
Q  258 gttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttata 357  Q
    |||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| |||||||||  ||| |||| |||| |||||||||||||||    
T  40314001 gttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtgg--tacaccctttacacatgatttttcttata 40314098  T
Q  358 attccatttctctctcttctttatcactca 387  Q
    ||||||  |||||||| |||||||||||||    
T  40314099 attccaaatctctctcctctttatcactca 40314128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 159 - 387
Target Start/End: Complemental strand, 41413636 - 41413409
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataat-gaacaaattctaatatggatcacttgctccatat 257  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||  | | ||||||| |||||||||||||||||| |||||    
T  41413636 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatat 41413537  T
Q  258 gttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttata 357  Q
    |||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| |||||||||  ||| |||| |||| |||||||||||||||    
T  41413536 gttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtgg--tacaccctttacacatgatttttcttata 41413439  T
Q  358 attccatttctctctcttctttatcactca 387  Q
    ||||||  ||||| || |||||||||||||    
T  41413438 attccaaatctctttcctctttatcactca 41413409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 30624885 - 30625115
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    |||||||||||| ||||||||||||| | |    ||||||||| |||||| ||||||||||||||  ||  | ||||| |||||||||||||||||| ||    
T  30624885 aattgacttttttagtgaagtcgtttaattcaaccaatcagatttcaagtcatgacacgtcagatgttgggataaattttaatatggatcacttgcttca 30624984  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    |||||||||||||||||||||||||||||  || ||||| |||||||||  |||| |||||| |||||||||  ||| ||||||||| ||||||||||||    
T  30624985 tatgttccaccatagacaagtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtgg--tacaccctctacacatgatttttctt 30625082  T
Q  355 ataattccatttctctctcttctttatcactca 387  Q
    ||  ||||| |||||| || |||||||||||||    
T  30625083 atttttccaattctctttcctctttatcactca 30625115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 31482262 - 31482104
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga--taatgaacaaattctaatatggatcacttgctccata 256  Q
    |||||| ||| || |||||||||||||| | |||||| || | |||||||||||| |||||  ||| || |||||| |||||||||||||||||||||||    
T  31482262 tgacttcttcggtaaagtcgtttgaatgagccaatcaaattttaagtgatgacacttcagaagtaagga-caaattataatatggatcacttgctccata 31482164  T
Q  257 tgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 316  Q
    ||||||||||||||||  |||| |||||||||||||  |||||||||  |||| ||||||    
T  31482163 tgttccaccatagacagatttacttcatgatcttaatggttagatttgtttggtctctat 31482104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 39884578 - 39884640
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    |||||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  39884578 tgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcagata 39884640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 39884696 - 39884752
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 39884752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 24788517 - 24788459
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  24788517 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 24788459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 381
Target Start/End: Complemental strand, 24788400 - 24788296
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||| ||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 24788303  T
Q  375 tctttat 381  Q
    |||||||    
T  24788302 tctttat 24788296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 27292967 - 27293197
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||| | |  | ||||||||| |||||  ||||||||||| ||  ||  |||||||||||||||||||||||| | ||    
T  27292967 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtcatatgttgggacaaattctaatatggatcacttgtttca 27293066  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| |||||| |||||||||  ||| ||||||||| ||||||||||||    
T  27293067 tatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtgg--tacaccctctacacatgatttttctt 27293164  T
Q  355 ataattccatttctctctcttctttatcactca 387  Q
    ||  ||||| |||||| || |||||||||||||    
T  27293165 atttttccaattctctttcctctttatcactca 27293197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 4919036 - 4919265
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||  | |  | ||||||||| |||||  ||||||||||||||  ||  |||||||||||||||||||||||| | ||    
T  4919036 aattgactttttcggtgaagtcgtta-attcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttca 4919134  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||  |||| ||||||  |||||||||| |||  ||||||| ||||||||||||    
T  4919135 tatgttccaccatagacaagtttatttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacg--ctctacacatgatttttctt 4919232  T
Q  355 ataattccatttctctctcttctttatcactca 387  Q
    ||  ||||| |||| | || |||||||||||||    
T  4919233 atttttccaattctatttcctctttatcactca 4919265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 190 - 381
Target Start/End: Original strand, 42976386 - 42976575
Alignment:
Q  190 caatcagatatcaagtgatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatct 289  Q
    ||||||||| ||||| |||||||||||| ||   ||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||    
T  42976386 caatcagatttcaagagatgacacgtcacatgtagaataaattttaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatct 42976485  T
Q  290 taacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttctttat 381  Q
    |||| ||||||||||||||| |||||| ||| |||||  ||| || |||||| |||||||||||| || |  || ||||||||| |||||||    
T  42976486 taacggttagatttacttggtctctatgttaatgtgg--tacaccatctacacatgatttttcttctagtatcaattctctctcctctttat 42976575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 372
Target Start/End: Complemental strand, 45989679 - 45989591
Alignment:
Q  282 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctct 372  Q
    |||||||||||| |||||||||| |||| |||||| |||||||||||||  || |||||| |||||||||||| ||||| || ||||||||    
T  45989679 catgatcttaacggttagatttaattggtctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctctct 45989591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 15531405 - 15531343
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    ||||||||||||||||||||||||||||   ||||||||| ||||||||||| ||||||||||    
T  15531405 tgactttttcagtgaagtcgtttgaatgaaccaatcagatttcaagtgatgatacgtcagata 15531343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 28679508 - 28679612
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||| |||||||||| ||||| |||||||||  |||||| |||||||||||||  || |||||| |||||||||||| || | ||| || ||||||     
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtata--ccatctacacatgatttttcttctagtaccaattttctctcc 28679605  T
Q  375 tctttat 381  Q
    |||||||    
T  28679606 tctttat 28679612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 42069115 - 42069019
Alignment:
Q  282 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttcttta 380  Q
    |||||||||||| |||||||||| |||  |||||| |||||||||||||  || |||||| |||||||||||| ||||| || |||| |||| ||||||    
T  42069115 catgatcttaacggttagatttaattgatctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctttctcctcttta 42069019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 381
Target Start/End: Complemental strand, 55919463 - 55919359
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||||||||| |||| |||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 55919366  T
Q  375 tctttat 381  Q
    |||||||    
T  55919365 tctttat 55919359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 15531287 - 15531231
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 15531231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 20133293 - 20133351
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  20133293 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 20133351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 24228337 - 24228276
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagat 220  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||    
T  24228337 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagat 24228276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 20133410 - 20133487
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| ||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttctt 20133487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 47031528 - 47031452
Alignment:
Q  282 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataatt 360  Q
    |||||||||||  |||||||||| |||  |||||| |||||||||||||  || |||||| |||||||||||| |||||    
T  47031528 catgatcttaatggttagatttaattgatctctatgttattgtggtata--ccatctacacatgatttttcttctaatt 47031452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 55919580 - 55919526
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacac 213  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||    
T  55919580 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacac 55919526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 14096277 - 14096507
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||| | |  | ||||||||| |||||  ||||||||||||||  ||  |||||||||||||||||||||||| | ||    
T  14096277 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagacatgacacgtcagatgttgggacaaattctaatatggatcacttgtttca 14096376  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| ||||||  |||||||||| |||  ||||||| ||||||||||||    
T  14096377 tatgttccaccatagacaagtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggtacacg--ctctacacatgatttttctt 14096474  T
Q  355 ataattccatttctctctcttctttatcactca 387  Q
    ||  ||||| |||| | || |||||||||||||    
T  14096475 atttttccaattctatttcctctttatcactca 14096507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 18977200 - 18977134
Alignment:
Q  262 caccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggta 18977134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 33755263 - 33755202
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  33755263 gactttttcggtgaagtcgtttgaatgggtcaattagatttcaagtgatgacacgtcagata 33755202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 7089108 - 7089169
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    |||||||||  |||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  7089108 gactttttcgatgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagata 7089169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 37078830 - 37078890
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||| ||| |||||||||| |||||||| ||||||||| | ||||||||||||||||||    
T  37078830 tgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcaga 37078890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 7089225 - 7089280
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 330  Q
    ||||||||||||||||||  ||||||||||||||  |||||| |||||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggtata 7089280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 15330735 - 15330839
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 15330832  T
Q  375 tctttat 381  Q
    |||||||    
T  15330833 tctttat 15330839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 381
Target Start/End: Complemental strand, 37261773 - 37261669
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 37261676  T
Q  375 tctttat 381  Q
    |||||||    
T  37261675 tctttat 37261669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 17690487 - 17690545
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  17690487 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 17690545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 37078947 - 37079000
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 37079000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 381
Target Start/End: Complemental strand, 14810191 - 14810087
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||||||||| ||||  |||||||||| |||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 14810094  T
Q  375 tctttat 381  Q
    |||||||    
T  14810093 tctttat 14810087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 16429864 - 16429968
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| ||||| |||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 16429961  T
Q  375 tctttat 381  Q
    |||||||    
T  16429962 tctttat 16429968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 17690604 - 17690708
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||| ||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 17690701  T
Q  375 tctttat 381  Q
    |||||||    
T  17690702 tctttat 17690708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 33755146 - 33755091
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 330  Q
    ||||||||||||| ||||  ||||||||||||||| || ||| |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtata 33755091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 16429747 - 16429805
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| |||||||||||||||| || ||||||||| | || |||||||||||||    
T  16429747 tgacttcttcggtgaagtcgtttgaataggccaatcagattttaaatgatgacacgtca 16429805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 160 - 387
Target Start/End: Original strand, 19436697 - 19436923
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctccatatg 258  Q
    ||||||||| |||||||||||| | |  | ||||||||| |||||  |||| |||||| ||  ||  |||||||||||||||||||||||| | ||||||    
T  19436697 gactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgatacgtcatatgttgggacaaattctaatatggatcacttgtttcatatg 19436796  T
Q  259 ttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataa 358  Q
    ||||||||||||||||||||||||| |||||||||||||||||||  |||| |||||| |||||||||  ||| |||| |||| ||||||||||||||      
T  19436797 ttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtgg--tacaccctatacacatgatttttcttattt 19436894  T
Q  359 ttccatttctctctcttctttatcactca 387  Q
    ||||| |||||| || |||||||||||||    
T  19436895 ttccaattctctttcctctttatcactca 19436923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 155 - 310
Target Start/End: Original strand, 29258407 - 29258563
Alignment:
Q  155 caattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatgaacaaattctaatatggatcacttgctcca 254  Q
    |||||||||| |||  || ||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  29258407 caattgacttcttcgatgcagttgtttgaatgggccaatcagatttcaagtgatgacacgtcagataatggacaaattctaacatggatcacttgctcca 29258506  T
Q  255 tatgttccaccatagacaagtttatttcatgatc-ttaacagttagatttacttggc 310  Q
    | ||||||||| | |||||||||||||||| ||| ||||| ||||||||||||||||    
T  29258507 tgtgttccaccgtggacaagtttatttcataatctttaacggttagatttacttggc 29258563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 156 - 387
Target Start/End: Complemental strand, 29834141 - 29833911
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||  || ||||||||| | |  | ||||||||| |||||  |||||| |||||||  ||  ||||| |||||||||||||||||||| ||    
T  29834141 aattgacttttttggtaaagtcgtttaattcagccaatcagatttcaagccatgacatgtcagatgttgggacaaactctaatatggatcacttgcttca 29834042  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||  |||| |||||| ||||||||||| |  |||||| || |||||||| |||    
T  29834041 tatgttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtaaa--ccctctgcacatgattttactt 29833944  T
Q  355 ataattccatttctctctcttctttatcactca 387  Q
    ||  ||||| |||||| || |||||||||||||    
T  29833943 atttttccaattctctttcctctttatcactca 29833911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 372
Target Start/End: Original strand, 6442633 - 6442721
Alignment:
Q  282 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctct 372  Q
    |||||||||||| |||||||||| |||| |||||| |||||||||||||  || |||||| |||||||||||| ||||| || ||||||||    
T  6442633 catgatcttaactgttagatttaattggtctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctctct 6442721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 29243263 - 29243323
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||| ||| ||||||||||||||||||||||||||||| | || |||||||||||||||    
T  29243263 tgacttcttcggtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcaga 29243323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 45972423 - 45972527
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 45972520  T
Q  375 tctttat 381  Q
    |||||||    
T  45972521 tctttat 45972527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 45972306 - 45972364
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  45972306 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 45972364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 47327942 - 47327995
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 47327995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 34094118 - 34094207
Alignment:
Q  286 atcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttct 377  Q
    |||||||| |||||||||| |||  |||||| |||||||||||||  || |||||| |||||||||||| ||||| || |||| || |||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctttcacttct 34094207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 47327825 - 47327885
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||| ||| |||||||||| |||||||| ||||||||| | ||| ||||||||||||||    
T  47327825 tgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagcgatgacacgtcaga 47327885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 29243380 - 29243455
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||||||||  ||||||||||||||   ||| |||||||||||  ||| || |||||| ||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttg--atctctattattgtgg--tacaccatctacacatgatttttctt 29243455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 27286185 - 27286415
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatgaacaaattct-aatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||| | |  | ||||||||| |||||  ||||||||||||||  ||   ||||| | ||||||||||||||||| ||    
T  27286185 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaaaatttttaatatggatcacttgcttca 27286284  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||  |||| |||||| |||||||||  ||| ||||||||| ||||||||||||    
T  27286285 tatgttccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtgg--tacaccctctacacatgatttttctt 27286382  T
Q  355 ataattccatttctctctcttctttatcactca 387  Q
    ||  ||||| |||||| || |||||||||||||    
T  27286383 atttttccaattctctttcctctttatcactca 27286415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 171 - 373
Target Start/End: Original strand, 39241594 - 39241792
Alignment:
Q  171 tgaagtcgtttgaatggg-tcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctccatatgttccaccata 268  Q
    |||||||||||||||||| |||||||||| | ||||||| |||||||||||  ||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  39241594 tgaagtcgtttgaatggggtcaatcagattttaagtgataacacgtcagatgttgagacaaattctaatatg-atcacttgcttcatatgttccaccata 39241692  T
Q  269 gacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttct 368  Q
    ||||||||||||||||||||||||| ||||||||||| ||   ||| | |||||||||  ||| || |||||| |||||||||||| ||||| || ||||    
T  39241693 gacaagtttatttcatgatcttaacggttagatttacctg---tctttgttattgtgg--tacaccatctacacatgatttttcttctaattacaattct 39241787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 384
Target Start/End: Complemental strand, 52386010 - 52385783
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||| | |  | ||||||||| |||||  ||||||| ||| ||  ||  ||||||||||| ||||||||| || | ||    
T  52386010 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattctaaaatggatcacgtgtttca 52385911  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||  |||  |||||| |||||||||  ||| ||||||||| ||||||||||||    
T  52385910 tatgttccaccatagacaagtttatttcaagatctttacggttagatttgtttgatctctatgttattgtgg--tacaccctctacacatgatttttctt 52385813  T
Q  355 ataattccatttctctctcttctttatcac 384  Q
    |   ||||| |||||| || ||||||||||    
T  52385812 acttttccaattctctttcctctttatcac 52385783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 12981521 - 12981625
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 12981618  T
Q  375 tctttat 381  Q
    |||||||    
T  12981619 tctttat 12981625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 372
Target Start/End: Complemental strand, 45325704 - 45325616
Alignment:
Q  282 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctct 372  Q
    |||||||||||| |||||||||| || | |||||| |||||||||||||  || |||||| |||||||||||  ||||| || ||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtata--ccatctacacatgatttttctgttaatttcaattctctct 45325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 381
Target Start/End: Complemental strand, 45348344 - 45348240
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 45348247  T
Q  375 tctttat 381  Q
    |||||||    
T  45348246 tctttat 45348240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 12981404 - 12981462
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  12981404 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 12981462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 45348450 - 45348403
Alignment:
Q  170 gtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||||||||||||| |||||||||||| | || |||||||||||||    
T  45348450 gtgaagtcgtttgaataggtcaatcagattttaaatgatgacacgtca 45348403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 85895 - 85759
Alignment:
Q  8 cacttagtgtattgaaattcttccaaattctactactgttgtagcttggtttaaggctagtgatttagtttgctctatatatatacgaggattatgtcgg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||             |||||||||| ||    
T  85895 cacttagtgtattgaaattcttccaaattctactactgttgtagcttggtttaaggctagcgatttagtttgct-------------aggattatgtggg 85809  T
Q  108 gtgatgtttgaaggtgagttttaaagtgatatgctagatacttttttcaa 157  Q
    ||||||||||||| |||||||  |||||||||||||| ||||||| ||||    
T  85808 gtgatgtttgaagatgagtttctaagtgatatgctaggtacttttgtcaa 85759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 13802873 - 13802715
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga--taatgaacaaattctaatatggatcacttgctccata 256  Q
    |||||||||| || ||||||||||||||   ||||||||| | ||||||||||||||||||  ||| || |||||| |||||||||||||||||||||||    
T  13802873 tgactttttcggtaaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaagtaagga-caaattataatatggatcacttgctccata 13802775  T
Q  257 tgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 316  Q
    ||||||||||||||||  |||| || ||||||||||  |||||||||  |||| ||||||    
T  13802774 tgttccaccatagacagatttacttgatgatcttaatggttagatttgtttggtctctat 13802715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 3879660 - 3879599
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    ||||||||| ||||||||||||||||| | |||| |||| ||||||||||||||||||||||    
T  3879660 gactttttcggtgaagtcgtttgaatgagccaattagatttcaagtgatgacacgtcagata 3879599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 3879543 - 3879488
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 330  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtata 3879488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 30945633 - 30945584
Alignment:
Q  170 gtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||||    
T  30945633 gtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcaga 30945584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 23613575 - 23613678
Alignment:
Q  226 acaaattctaatatggatcacttgctccatatgttccaccatagacaa-gtttatttcatgatcttaacagttagatttacttggcctctatattattgt 324  Q
    ||||||||||||||||| ||||||||| |||||||||||||| || ||  ||| ||| | ||||||||| |||||||||  |||| ||| ||  ||||||    
T  23613575 acaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattgt 23613674  T
Q  325 ggta 328  Q
    ||||    
T  23613675 ggta 23613678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 531567 - 531625
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  531567 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 531625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 531684 - 531788
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    |||||||||| || ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 531781  T
Q  375 tctttat 381  Q
    |||||||    
T  531782 tctttat 531788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 30945527 - 30945452
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 354  Q
    ||||||||||||||||||  ||||||||||||||   ||| |||||||||||  ||| || |||||| ||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttg--atctctattattgtgg--tacaccatctacacatgatttttctt 30945452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 30900 - 30842
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  30900 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 30842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 381
Target Start/End: Complemental strand, 30783 - 30679
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 374  Q
    ||||||| ||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 30686  T
Q  375 tctttat 381  Q
    |||||||    
T  30685 tctttat 30679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University