View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0984-Insertion-11 (Length: 364)
Name: NF0984-Insertion-11
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0984-Insertion-11 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 43777490 - 43777844
Alignment:
| Q |
8 |
ttaatcccatcagcttttttctctttccgatgatatgaaatcggatcaa-tattacgaataacaatatatgagctatcaactatcatttaatagctaacc |
106 |
Q |
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| T |
43777490 |
ttaatcccatcagcttctttctctttccgatgatatgaaatcggatcaaatattacgaataacaatatctgagctatcaactattatttaatagctaacc |
43777589 |
T |
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| Q |
107 |
ttttatgtttgcaaattttataacatcccttgacgcaggaacgataatgaaaaatgtctctgaaacatgttctagttaagcattcgaaacgacaattaat |
206 |
Q |
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| T |
43777590 |
ttttatgtttgcaaattttataacatcccttgacgcaggaacgataatgaaaaatgtctctgaaacatgttctagttaaacattcgaaacgacaattaat |
43777689 |
T |
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| Q |
207 |
caaaaatgtcgaaaaagcatgagcttgggctacaactagcataatcaccaacatcatcgcaaaacattttttcacatggctcactgccataactcttttt |
306 |
Q |
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| T |
43777690 |
aaaaaatgtcgaaaaagcatcagcttgagttacaactagcataatcaccaacatcatcgcaaaacattttttcacatggctcactgccataactcttttt |
43777789 |
T |
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| Q |
307 |
aatattttgtaacttttcttaatctccacttaaattctcaactctgtgatgtttcaga |
364 |
Q |
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| T |
43777790 |
aatatt---taacttttcttaatctccacttaaattctcaactctgtgatgtttcaga |
43777844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 152 - 364
Target Start/End: Original strand, 43781181 - 43781390
Alignment:
| Q |
152 |
aatgaaaaatgtctctgaaacatgttctagttaagcattcgaaacgacaattaatcaaaaatgtcgaaaaagcatgagcttgggctacaactagcataat |
251 |
Q |
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| T |
43781181 |
aatggaaaatgtctctaaaacatgttatcgttaaacatccgacacgacattcaat---aaatggcgaaaaagcatgaggttgagttacaactagcataat |
43781277 |
T |
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| Q |
252 |
caccaacatcatcgcaaaacattttttcacatggctcactgccataactctttttaatattttgtaacttttcttaatctccacttaaattctcaactct |
351 |
Q |
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| T |
43781278 |
caccaacatcatcgtaaaacattttttcacttggctcactaccataactctttttaatattttttaacttttcttaatctccactaaaattctcaacttt |
43781377 |
T |
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| Q |
352 |
gtgatgtttcaga |
364 |
Q |
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| T |
43781378 |
gtgatgtttcaga |
43781390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 43770344 - 43770408
Alignment:
| Q |
300 |
tctttttaatattttgtaacttttcttaatctccacttaaattctcaactctgtgatgtttcaga |
364 |
Q |
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| T |
43770344 |
tctttttaatattttttaacttttcttaatcaccactaaaattctcaactttgtgatgtttcaga |
43770408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 18159170 - 18159221
Alignment:
| Q |
35 |
cgatgatatgaaatcggatcaatattacgaataacaatatatgagctatcaa |
86 |
Q |
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| T |
18159170 |
cgatgatataaaatcggatcaatatcacgaataacaatatctgagctatcaa |
18159221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 419157 - 419206
Alignment:
| Q |
37 |
atgatatgaaatcggatcaatattacgaataacaatatatgagctatcaa |
86 |
Q |
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| T |
419157 |
atgatataaaatcgaatcaatatcacgaataacaatatctgagctatcaa |
419206 |
T |
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