View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0984-Insertion-13 (Length: 240)
Name: NF0984-Insertion-13
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0984-Insertion-13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 34683570 - 34683338
Alignment:
| Q |
8 |
cttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttccacacgagctacaatttcactaagc |
107 |
Q |
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| T |
34683570 |
cttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttctacacgagctacaatttcactaagc |
34683471 |
T |
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| Q |
108 |
aaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcaccatcttttgcannnnnnngtgtgtttggataagatttta |
207 |
Q |
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| T |
34683470 |
aaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcaccatcttttgcatttttttgtgtgtttggataagatttta |
34683371 |
T |
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| Q |
208 |
ataaattctgaagctctagggctgcattattca |
240 |
Q |
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| T |
34683370 |
ataaattctgaagctctagggctgcattattca |
34683338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 34699803 - 34699642
Alignment:
| Q |
9 |
ttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttccacacgagctacaatttcactaagca |
108 |
Q |
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|||||||| || |||||||||||||| || |||||||| | ||||| ||||||||||| ||||||||||||||||||||| |||||| ||||| |||||| |
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| T |
34699803 |
ttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaatgtcttccacacgtgctacagtttcaataagca |
34699704 |
T |
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| Q |
109 |
aagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcacca |
170 |
Q |
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| T |
34699703 |
aagaaattaccgtgaccacttgaattacttccattattgggatttccatttttgcatcacca |
34699642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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