View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0984-Insertion-14 (Length: 215)
Name: NF0984-Insertion-14
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0984-Insertion-14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 4506878 - 4506676
Alignment:
| Q |
8 |
acaacttggttgaaagcactcacatttgccattgttaatcgccatcgtttctcttccttaattagaagatcatccattacttaaattcaactcacatgaa |
107 |
Q |
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| T |
4506878 |
acaacttggttgaaagcactcacatttgccattgttaatcgtcatcatttctcttcctta----gaagatcatccattacttaaattcaattcacatgaa |
4506783 |
T |
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| Q |
108 |
ctagtgcctttctttgaatacaatgtttatggtggtagtgatagccaaagttttcaaatcaacctatcaaacatgaatgaaccaaggctttttgggactc |
207 |
Q |
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| T |
4506782 |
ctagtgcctttctttgaatacaatgtttatggtggtagtgatagccagagttttcaaattaacctatcaaacatgaatgaaccaaggcttttt-ggactc |
4506684 |
T |
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| Q |
208 |
atgctcca |
215 |
Q |
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||| |||| |
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| T |
4506683 |
atgttcca |
4506676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 15750997 - 15751112
Alignment:
| Q |
7 |
aacaacttggttgaaagcactcacatttgccattgttaatcgccatcgtttctcttccttaattagaagatcatccattacttaaattcaactcacatga |
106 |
Q |
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|||||| ||||||||||| || || ||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||| || || || ||||| |
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| T |
15750997 |
aacaacatggttgaaagccctaacctttgctattgttaatcgtaatcgtttctcttc----tttagagaatcatccattacttacatctaattctcatga |
15751092 |
T |
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| Q |
107 |
actagtgcctttctttgaat |
126 |
Q |
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| T |
15751093 |
acttgtgccttccttggaat |
15751112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 1627055 - 1626999
Alignment:
| Q |
7 |
aacaacttggttgaaagcactcacatttgccattgttaatcgccatcgtttctcttc |
63 |
Q |
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| T |
1627055 |
aacaacatggttgaaagccctaacctttgccattattaatcgccatcatttctcttc |
1626999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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