View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0984-Insertion-15 (Length: 236)

Name: NF0984-Insertion-15
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0984-Insertion-15
NF0984-Insertion-15
[»] chr3 (16 HSPs)
chr3 (8-236)||(31711121-31711348)
chr3 (8-196)||(31710866-31711053)
chr3 (8-236)||(31010278-31010493)
chr3 (26-89)||(44488893-44488956)
chr3 (10-63)||(27290882-27290935)
chr3 (12-57)||(50600161-50600206)
chr3 (10-86)||(49465917-49465993)
chr3 (10-89)||(37273144-37273223)
chr3 (10-72)||(20192587-20192649)
chr3 (10-72)||(21574517-21574579)
chr3 (19-89)||(30923888-30923958)
chr3 (10-80)||(48048963-48049033)
chr3 (19-72)||(43115083-43115136)
chr3 (13-89)||(11253511-11253587)
chr3 (19-63)||(36200132-36200176)
chr3 (12-96)||(41644428-41644512)
[»] chr2 (15 HSPs)
chr2 (8-89)||(34652015-34652096)
chr2 (12-74)||(1647261-1647323)
chr2 (18-69)||(14451039-14451090)
chr2 (13-79)||(5133792-5133858)
chr2 (10-80)||(32364712-32364782)
chr2 (20-72)||(1939323-1939375)
chr2 (10-74)||(10285885-10285949)
chr2 (13-89)||(32821819-32821895)
chr2 (10-57)||(30538154-30538201)
chr2 (11-74)||(31739954-31740017)
chr2 (13-79)||(41042006-41042072)
chr2 (10-72)||(43065431-43065493)
chr2 (12-57)||(787374-787419)
chr2 (12-96)||(16451121-16451206)
chr2 (19-80)||(41809235-41809296)
[»] chr7 (8 HSPs)
chr7 (10-74)||(12234870-12234934)
chr7 (10-61)||(44686968-44687019)
chr7 (10-72)||(46082063-46082125)
chr7 (10-72)||(48157101-48157163)
chr7 (6-57)||(11047909-11047960)
chr7 (19-57)||(39539771-39539809)
chr7 (12-57)||(11048069-11048114)
chr7 (8-80)||(40428574-40428646)
[»] chr6 (9 HSPs)
chr6 (10-89)||(4420653-4420732)
chr6 (10-63)||(32577967-32578020)
chr6 (10-89)||(2455820-2455899)
chr6 (19-72)||(9667975-9668028)
chr6 (10-80)||(1669779-1669849)
chr6 (10-63)||(3155211-3155264)
chr6 (10-71)||(20377901-20377962)
chr6 (10-71)||(30863274-30863335)
chr6 (25-89)||(3168257-3168321)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-89)||(306336-306406)
[»] chr8 (6 HSPs)
chr8 (10-72)||(11183572-11183634)
chr8 (13-89)||(4055600-4055676)
chr8 (10-57)||(14949908-14949955)
chr8 (10-56)||(2095955-2096001)
chr8 (13-69)||(926505-926561)
chr8 (13-80)||(9541149-9541214)
[»] scaffold0147 (1 HSPs)
scaffold0147 (19-80)||(12694-12755)
[»] chr4 (9 HSPs)
chr4 (8-80)||(29467603-29467675)
chr4 (19-96)||(50800020-50800096)
chr4 (12-96)||(1137715-1137799)
chr4 (12-68)||(30631987-30632043)
chr4 (10-89)||(2996583-2996662)
chr4 (18-89)||(11158347-11158417)
chr4 (10-57)||(27721759-27721806)
chr4 (22-74)||(11264326-11264378)
chr4 (167-199)||(14171979-14172011)
[»] chr5 (12 HSPs)
chr5 (10-89)||(37611196-37611275)
chr5 (10-89)||(37787926-37788005)
chr5 (10-96)||(14295509-14295595)
chr5 (19-80)||(17259236-17259297)
chr5 (10-89)||(12242691-12242770)
chr5 (10-52)||(29363055-29363097)
chr5 (12-89)||(17368686-17368763)
chr5 (160-197)||(35055108-35055145)
chr5 (160-197)||(35071850-35071887)
chr5 (8-57)||(37794677-37794726)
chr5 (153-197)||(14257361-14257405)
chr5 (45-89)||(38104873-38104917)
[»] chr1 (13 HSPs)
chr1 (7-49)||(24968394-24968436)
chr1 (7-49)||(25432261-25432303)
chr1 (109-199)||(49557035-49557125)
chr1 (10-67)||(17628631-17628688)
chr1 (10-74)||(11639397-11639461)
chr1 (19-60)||(3070080-3070121)
chr1 (10-71)||(7262499-7262560)
chr1 (19-72)||(26184775-26184828)
chr1 (12-77)||(31517723-31517788)
chr1 (15-63)||(3597267-3597315)
chr1 (20-80)||(4622112-4622172)
chr1 (12-72)||(4699598-4699658)
chr1 (19-55)||(35350684-35350720)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 31711121 - 31711348
Alignment:
Q  8 aaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaagcagctttataagcaaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  31711121 aaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaaacagctt-ataagcaaag 31711219  T
Q  108 aattttactttgttttatcctttgttattggaataatctatacagaagcacgtatatgttaaatgcttatgttataagtacttaattaagctttatccaa 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31711220 aattttactttgttttatcctttgttattgaaataatctatacagaagcacatatatgttaaatgcttatgttataagtacttaattaagctttatccaa 31711319  T
Q  208 acagttatgttccagttatagcatccata 236  Q
    |||||||||||||||||||||||||||||    
T  31711320 acagttatgttccagttatagcatccata 31711348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 31710866 - 31711053
Alignment:
Q  8 aaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaagcagctttataagcaaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  31710866 aaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaaacagctt-ataagcaaag 31710964  T
Q  108 aattttactttgttttatcctttgttattggaataatctatacagaagcacgtatatgttaaatgcttatgttataagtacttaattaa 196  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31710965 aattttactttgttttatcctttgttattgaaataatctatacagaagcacatatatgttaaatgcttatgttataagtacttaattaa 31711053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 31010493 - 31010278
Alignment:
Q  8 aaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaagcagctttataagcaaag 107  Q
    |||||||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| |    
T  31010493 aaagcttatagaaacaacttatgacatgtccataagctgttttcagcttaattccataagctctctatgataggttacgaaaacagcttt-taagcaagg 31010395  T
Q  108 aattttactttgttttatcctttgttattggaataatctatacagaagcacgtatatgttaaatgcttatgttataagtacttaattaagctttatccaa 207  Q
    ||||||||||||||            |||| |||||| ||| || |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||    
T  31010394 aattttactttgtt------------attgaaataatttatgcataagcacatatatgataaaagcttatgttataagtacttaattaagctttatccaa 31010307  T
Q  208 acagttatgttccagttatagcatccata 236  Q
    ||| |||||||||||||||||||||||||    
T  31010306 acaattatgttccagttatagcatccata 31010278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 44488956 - 44488893
Alignment:
Q  26 ttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||| ||| ||||    
T  44488956 ttatgacatgcccatgagcggttttcagcttatttccataagttctctaagatagcttatgaaa 44488893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 27290882 - 27290935
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattcca 63  Q
    ||||||| |||||| |||||||||||||||| |||||||||||||||| |||||    
T  27290882 agcttatgaaaacagcttatgacatgcccataagctgttttcagcttatttcca 27290935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 50600161 - 50600206
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagctta 57  Q
    ||||||||||||||| |||||||| ||| |||||||||||||||||    
T  50600161 cttataaaaacaactcatgacatgtccacgagctgttttcagctta 50600206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 49465917 - 49465993
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaag 86  Q
    |||||||| ||||||||||||||||| |||||| || |||||| |||| ||||| || |||| || ||||| |||||    
T  49465917 agcttatagaaacaacttatgacatgtccatgaactattttcaacttatttccataaactctttaggatagattaag 49465993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 37273223 - 37273144
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    |||||||  ||||||||||||||||| |||| || |||||||| |||| ||||| ||| |||| ||||||| ||| ||||    
T  37273223 agcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaa 37273144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 20192587 - 20192649
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    |||||||| ||||| ||||||||||| |||| ||||||||||| || | ||||| ||||||||    
T  20192587 agcttatagaaacagcttatgacatgtccataagctgttttcaactcatttccataagctctc 20192649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 21574579 - 21574517
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    ||||||| ||||||||||||||||||  ||| ||||| ||| |||||| ||||| ||||||||    
T  21574579 agcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctc 21574517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 30923888 - 30923958
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||| ||||||||||| | || |||||||||||||||| ||| | || ||||||| ||||||||| ||||    
T  30923888 aaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaa 30923958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 48048963 - 48049033
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    ||||||| ||| ||||| |||||||| |||| |||||||||||||||| ||||| || ||| | |||||||    
T  48048963 agcttatgaaaccaactcatgacatgtccataagctgttttcagcttatttccataacctccccaagatag 48049033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 43115136 - 43115083
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    ||||||||||||||||| |||| |  ||||||||||||| ||||| ||||||||    
T  43115136 aaacaacttatgacatgtccataacttgttttcagcttatttccataagctctc 43115083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 11253587 - 11253511
Alignment:
Q  13 ttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||||||||||||||||||||  | || | ||||||||||| || ||||  |||||||||| ||||| ||| ||||    
T  11253587 ttataaaaacaacttatgacatatctataaactgttttcagcctatttccctaagctctctaggatagcttatgaaa 11253511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 36200176 - 36200132
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattcca 63  Q
    ||||||||||||||||| |||| || ||||||||||||| |||||    
T  36200176 aaacaacttatgacatgtccataagttgttttcagcttatttcca 36200132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 41644428 - 41644512
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaagcagctt 96  Q
    ||||||||||||||||  |||||   ||| |||||||||||||||| ||||  ||| |||||| ||||| ||| |||| ||||||    
T  41644428 cttataaaaacaacttgggacattttcataagctgttttcagcttatttccttaagatctctacgatagcttatgaaaacagctt 41644512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 34652015 - 34652096
Alignment:
Q  8 aaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||| |||| ||||| |||||||| ||||||| ||| ||||    
T  34652015 aaagcttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaa 34652096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 1647323 - 1647261
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctcta 74  Q
    ||||| |||||| |||||||||||| ||| |||||||||||||||| ||||| ||||||||||    
T  1647323 cttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctctcta 1647261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 14451039 - 14451090
Alignment:
Q  18 aaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagct 69  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||| |||||    
T  14451039 aaaacaacttatgacatgaccataagctgttttcagcttatttccacaagct 14451090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 5133858 - 5133792
Alignment:
Q  13 ttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagata 79  Q
    |||||||||||||||||||||||  ||| ||||  |||||||||| ||||| ||||||||| |||||    
T  5133858 ttataaaaacaacttatgacatggtcataagctactttcagcttatttccataagctctcttagata 5133792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 32364712 - 32364782
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    ||||||||||| || |||||||| || ||||||| ||||||||||||| || || ||| ||||||||||||    
T  32364712 agcttataaaaccagcttatgacgtgtccatgagttgttttcagcttattttcataagatctctaagatag 32364782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 1939323 - 1939375
Alignment:
Q  20 aacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    |||||||||||||||| |||| ||||||||||| |||| ||||| ||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 1939375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 10285949 - 10285885
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctcta 74  Q
    ||||||| |||| ||||||||||||| |||| ||||||||||| |||| ||||| ||| ||||||    
T  10285949 agcttatgaaaataacttatgacatgtccataagctgttttcaacttatttccataagttctcta 10285885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 32821895 - 32821819
Alignment:
Q  13 ttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||| ||||||||||||||||| |||| |||||||||||| ||| ||| | ||||||| || ||||| ||| ||||    
T  32821895 ttatagaaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaa 32821819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 30538154 - 30538201
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagctta 57  Q
    |||||||| ||||||||||||||||| |||| || |||||||||||||    
T  30538154 agcttatagaaacaacttatgacatgtccataagttgttttcagctta 30538201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 31739954 - 31740017
Alignment:
Q  11 gcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctcta 74  Q
    ||||||| |||||||| ||||||||  ||| |||||||||||| ||| ||||| ||||||||||    
T  31739954 gcttatagaaacaactcatgacatgatcataagctgttttcagattatttccataagctctcta 31740017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 41042006 - 41042072
Alignment:
Q  13 ttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagata 79  Q
    ||||| ||||||||||| ||||| |||| ||||||||||| |||| ||||| || ||||| ||||||    
T  41042006 ttatagaaacaacttattacatgtccatcagctgttttcaacttatttccataaactctccaagata 41042072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 43065431 - 43065493
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    ||||||| |||||||||||||||||| |||| |  ||||||||||||| ||| | ||||||||    
T  43065431 agcttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagctctc 43065493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 787419 - 787374
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagctta 57  Q
    ||||| |||||| ||||||||||| |||| ||||||||||||||||    
T  787419 cttatgaaaacagcttatgacatgtccataagctgttttcagctta 787374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 16451206 - 16451121
Alignment:
Q  12 cttataaaaacaacttatgacat-gcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaagcagctt 96  Q
    ||||| ||||||||||||||||| |  |||||||||||||||||||| || ||  || |||| ||||||| ||| |||| ||||||    
T  16451206 cttatgaaaacaacttatgacattgttcatgagctgttttcagcttattttcacgagttctccaagatagcttacgaaaacagctt 16451121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 41809235 - 41809296
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    |||||||||||||||||  ||| || |||||| |||||| ||||| ||||| ||||||||||    
T  41809235 aaacaacttatgacatgttcataagttgtttttagcttatttccataagctttctaagatag 41809296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 12234870 - 12234934
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctcta 74  Q
    |||||||| ||||||||||||||||| | || |||||||||||||||| ||||| ||||||||||    
T  12234870 agcttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctcta 12234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 44687019 - 44686968
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattc 61  Q
    |||||||  ||||||||||||||||| |||||||||||||||| ||||||||    
T  44687019 agcttatggaaacaacttatgacatgtccatgagctgttttcaacttaattc 44686968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 46082125 - 46082063
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    ||||||| |||||||||||||||||| |||| || ||||||||||||| || || ||||||||    
T  46082125 agcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctctc 46082063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 48157101 - 48157163
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    |||||||| |||||||||||| |||| |||| |||||||||||||||| ||||| ||| ||||    
T  48157101 agcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataagatctc 48157163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 11047960 - 11047909
Alignment:
Q  6 caaaagcttataaaaacaacttatgacatgcccatgagctgttttcagctta 57  Q
    ||||| ||||||||||||||||||||||||  ||| ||||||||| ||||||    
T  11047960 caaaaacttataaaaacaacttatgacatgttcataagctgtttttagctta 11047909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 39539771 - 39539809
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagctta 57  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  39539771 aaacaacttatgacatgtccataagctgttttcagctta 39539809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 11048114 - 11048069
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagctta 57  Q
    ||||| ||||||||||||||||||  ||| ||||||||||||||||    
T  11048114 cttatcaaaacaacttatgacatgttcataagctgttttcagctta 11048069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 40428646 - 40428574
Alignment:
Q  8 aaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    |||||||||| | || |||||||||| ||| || | |||||||||||||| ||||| ||||||| || |||||    
T  40428646 aaagcttatacatacgacttatgacacgccgataaactgttttcagcttatttccataagctctttaggatag 40428574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 4420732 - 4420653
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    |||||||| |||||| ||||||||||  ||| |||||||||||||||| ||||| |||||||| ||||||| ||| ||||    
T  4420732 agcttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaa 4420653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 32577967 - 32578020
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattcca 63  Q
    ||||||| |||||||||||||||||| || |||||||||||||||||| |||||    
T  32577967 agcttatgaaaacaacttatgacatgtccttgagctgttttcagcttatttcca 32578020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 2455899 - 2455820
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    |||||||  |||||||||||||||||||||| | || |||||| |||| ||||| |||||||| ||||||| ||| ||||    
T  2455899 agcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctctccaagatagcttatgaaa 2455820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 9667975 - 9668028
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    ||||||||||||||||| |||| ||||||||||| |||| ||||| ||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 9668028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 1669779 - 1669849
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    ||||||| |||||||||||||||||| | || |||||||||||||| | ||| | |||| ||||| |||||    
T  1669779 agcttatgaaaacaacttatgacatgtctataagctgttttcagctcatttcgacaagccctctaggatag 1669849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 3155264 - 3155211
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattcca 63  Q
    |||||||| | ||||||||||||||| | || |||||||||||||||| |||||    
T  3155264 agcttatatacacaacttatgacatgtctataagctgttttcagcttatttcca 3155211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 20377901 - 20377962
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctct 71  Q
    ||||||| |||||||||||||||||| | || || ||||||| ||||| |||| ||||||||    
T  20377901 agcttatgaaaacaacttatgacatgtctataagttgttttcggcttatttcccaaagctct 20377962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 30863335 - 30863274
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctct 71  Q
    ||||||| ||||||||||||||||||  ||| || ||||||||||||| ||| | |||||||    
T  30863335 agcttatgaaaacaacttatgacatgtacataagttgttttcagcttacttctataagctct 30863274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 3168257 - 3168321
Alignment:
Q  25 cttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||||||||| ||||  ||||||||||||||| ||||  |||||||| | ||||| ||||||||    
T  3168257 cttatgacatgtccatcggctgttttcagcttatttccttaagctctccaggatagcttaagaaa 3168321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 306406 - 306336
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||| |||||||||||||||| |||||||||||||||| || || |||||||||| ||||| ||| ||||    
T  306406 aaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaa 306336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 11183634 - 11183572
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    |||||||||||||||||||||| ||| | || |||||||||||||||| ||||| ||||||||    
T  11183634 agcttataaaaacaacttatgatatgtctataagctgttttcagcttatttccataagctctc 11183572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 4055600 - 4055676
Alignment:
Q  13 ttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||| ||| ||||||||||||| |||| | |||||||||||||| ||||  ||||||||| |||||| ||| ||||    
T  4055600 ttatagaaataacttatgacatgtccataaactgttttcagcttatttccttaagctctctgagatagcttatgaaa 4055676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 14949955 - 14949908
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagctta 57  Q
    ||||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  14949955 agcttatgaaaataacttatgacatgtccataagctgttttcagctta 14949908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 2096001 - 2095955
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagctt 56  Q
    |||||| ||||||| ||||||| ||| ||||||||||||||||||||    
T  2096001 agcttacaaaaacaccttatgatatgtccatgagctgttttcagctt 2095955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 926561 - 926505
Alignment:
Q  13 ttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagct 69  Q
    |||| ||||||||||||||||||  ||| ||| |||||||||||| ||||| |||||    
T  926561 ttatcaaaacaacttatgacatgttcataagccgttttcagcttatttccacaagct 926505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 9541149 - 9541214
Alignment:
Q  13 ttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    |||| |||||| ||||||||||  |||| | |||||||| ||||| | ||||||||||||||||||||    
T  9541149 ttatgaaaacatcttatgacat--ccataatctgttttcggcttattaccaaaagctctctaagatag 9541214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 12694 - 12755
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    ||||||||||||||||| |||| || |||||||||||||  |||| ||||||||||||||||    
T  12694 aaacaacttatgacatgtccataagttgttttcagcttagctccataagctctctaagatag 12755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 29467603 - 29467675
Alignment:
Q  8 aaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    |||||||||| ||||  ||||||||||| |||| |||||||||||||||| ||||| || ||||||| |||||    
T  29467603 aaagcttatagaaacggcttatgacatgtccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 50800020 - 50800096
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaagcagctt 96  Q
    ||||||||||||||||| | || |||||||||||||||| |||| |||| |||| | ||||| |||||||| ||||||    
T  50800020 aaacaacttatgacatgtctataagctgttttcagcttatttcc-aaagttctccatgatagcttaagaaaacagctt 50800096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 1137799 - 1137715
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaagcagctt 96  Q
    ||||| |||||| |||||||||||  ||| || ||||||||| ||| ||||| |||||||||  ||||| ||| |||||||||||    
T  1137799 cttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagctctcttggatagtttatgaaagcagctt 1137715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 30632043 - 30631987
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagc 68  Q
    ||||||||||||||||||| ||||  ||| ||||||||| |||||| ||||||||||    
T  30632043 cttataaaaacaacttatggcatgttcataagctgttttaagcttatttccaaaagc 30631987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 2996662 - 2996583
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||||| |||||||||||||||||| |||| |||| |||||| |||| || || | |||||| ||||||| ||| ||||    
T  2996662 agcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaa 2996583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 11158347 - 11158417
Alignment:
Q  18 aaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||||| || |||||| ||||| | |||||||||||||| ||||| |||||||||||||||| ||| ||||    
T  11158347 aaaacaaattttgacat-cccataaactgttttcagcttatttccacaagctctctaagatagcttatgaaa 11158417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 27721806 - 27721759
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagctta 57  Q
    ||||||||||||| |||||||||||  |||| ||||||||||||||||    
T  27721806 agcttataaaaactacttatgacatatccataagctgttttcagctta 27721759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 11264378 - 11264326
Alignment:
Q  22 caacttatgacatgcccatgagctgttttcagcttaattccaaaagctctcta 74  Q
    |||||||||||||| |||| | ||||||||| |||| ||||| ||||||||||    
T  11264378 caacttatgacatgtccataaactgttttcaacttatttccataagctctcta 11264326  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 14172011 - 14171979
Alignment:
Q  167 taaatgcttatgttataagtacttaattaagct 199  Q
    ||||||||||||||||||| |||||||||||||    
T  14172011 taaatgcttatgttataagcacttaattaagct 14171979  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 37611196 - 37611275
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||||| |||||||||| |||||||  ||| |||||||||||| ||| ||||| |||||||| ||||||| ||| ||||    
T  37611196 agcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaa 37611275  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 37787926 - 37788005
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||||| |||||||||| |||||||  ||| |||||||||||| ||| ||||| |||||||| ||||||| ||| ||||    
T  37787926 agcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaa 37788005  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 14295595 - 14295509
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaagcagctt 96  Q
    ||||||| |||||| ||||||| ||| | || |||||||||||||||| ||| |||||||||| | ||||| ||| |||| ||||||    
T  14295595 agcttatgaaaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagctt 14295509  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 17259297 - 17259236
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    ||||||||| ||||||| |||||||||||| | |||||| ||||| || |||||||||||||    
T  17259297 aaacaacttttgacatgaccatgagctgttctaagcttatttccataaactctctaagatag 17259236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 12242691 - 12242770
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    |||||||  ||| |||||||||||||  ||| || ||||||||||||| ||||| |||||||| ||||||| ||| ||||    
T  12242691 agcttatggaaaaaacttatgacatgaacattagttgttttcagcttacttccataagctctccaagatagcttatgaaa 12242770  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 29363097 - 29363055
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttca 52  Q
    ||||||| ||||||||||||||||||||||| || ||||||||    
T  29363097 agcttatgaaaacaacttatgacatgcccataagttgttttca 29363055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 17368763 - 17368686
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||| ||||||||||||||||||  |||  || |||||||||||| ||||| || ||||| ||||||| ||| ||||    
T  17368763 cttatgaaaacaacttatgacatgttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaa 17368686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 35055145 - 35055108
Alignment:
Q  160 tatatgttaaatgcttatgttataagtacttaattaag 197  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  35055145 tatatgttaaatgcttgtgttataagtgcttaattaag 35055108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 35071887 - 35071850
Alignment:
Q  160 tatatgttaaatgcttatgttataagtacttaattaag 197  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  35071887 tatatgttaaatgcttgtgttataagtgcttaattaag 35071850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 37794677 - 37794726
Alignment:
Q  8 aaagcttataaaaacaacttatgacatgcccatgagctgttttcagctta 57  Q
    ||||||||| ||||||||||||||||||  ||| ||||||||| ||||||    
T  37794677 aaagcttatgaaaacaacttatgacatgttcataagctgttttgagctta 37794726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 14257405 - 14257361
Alignment:
Q  153 aagcacgtatatgttaaatgcttatgttataagtacttaattaag 197  Q
    |||||| |||||||| | |||||||||||||||| ||||||||||    
T  14257405 aagcacttatatgtttagtgcttatgttataagtgcttaattaag 14257361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 38104873 - 38104917
Alignment:
Q  45 tgttttcagcttaattccaaaagctctctaagataggttaagaaa 89  Q
    ||||||||||||| ||||| |||||||||||||||| ||| ||||    
T  38104873 tgttttcagcttatttccataagctctctaagatagcttatgaaa 38104917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 24968394 - 24968436
Alignment:
Q  7 aaaagcttataaaaacaacttatgacatgcccatgagctgttt 49  Q
    ||||||||||||||||||||||||||||| |||| ||||||||    
T  24968394 aaaagcttataaaaacaacttatgacatgtccataagctgttt 24968436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 25432303 - 25432261
Alignment:
Q  7 aaaagcttataaaaacaacttatgacatgcccatgagctgttt 49  Q
    ||||||||||||||||||||||||||||| |||| ||||||||    
T  25432303 aaaagcttataaaaacaacttatgacatgtccataagctgttt 25432261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 49557125 - 49557035
Alignment:
Q  109 attttactttgttttatcctttgttattggaataatctatacagaagcacgtatatgttaaatgcttatgttataagtacttaattaagct 199  Q
    |||| ||||| ||||||| |||||||| | |||||  ||||||| ||||| |||||| ||| || ||| |||||||| |||||||||||||    
T  49557125 atttaactttattttatcttttgttatagaaataacttatacagcagcacttatatgataagtgattacgttataagcacttaattaagct 49557035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 17628688 - 17628631
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaag 67  Q
    |||||||  ||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  17628688 agcttatggaaacaacttatgacatgtccataagctgttttcagcatatttccaaaag 17628631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 11639397 - 11639461
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctcta 74  Q
    ||||||| |||||| ||||||||||| |||| ||||||||| |||||| || || ||||||||||    
T  11639397 agcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctcta 11639461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 3070080 - 3070121
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaatt 60  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  3070080 aaacaacttatgacatgttcataagctgttttcagcttaatt 3070121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 7262499 - 7262560
Alignment:
Q  10 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctct 71  Q
    |||||||||||||| ||| |||||||  ||| ||||||||||| |||| ||||| |||||||    
T  7262499 agcttataaaaacagcttttgacatgttcataagctgttttcaccttatttccacaagctct 7262560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 26184828 - 26184775
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    ||||| ||||||||||| |||| |||||||||||| ||| ||||| ||||||||    
T  26184828 aaacagcttatgacatgtccataagctgttttcagattatttccataagctctc 26184775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 31517723 - 31517788
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaaga 77  Q
    ||||| ||||||||| ||||||||  ||| |||||||||||||||| || || |||||||| ||||    
T  31517723 cttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctccaaga 31517788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 3597267 - 3597315
Alignment:
Q  15 ataaaaacaacttatgacatgcccatgagctgttttcagcttaattcca 63  Q
    ||||||| ||||||||||||| |||| |||| ||||||||||| |||||    
T  3597267 ataaaaataacttatgacatggccataagctattttcagcttatttcca 3597315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 4622172 - 4622112
Alignment:
Q  20 aacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagatag 80  Q
    |||| ||||||||||| |||| ||||||||| |||||| || || |||||||| |||||||    
T  4622172 aacatcttatgacatgtccataagctgtttttagcttattttcacaagctctccaagatag 4622112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 4699598 - 4699658
Alignment:
Q  12 cttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctc 72  Q
    ||||| ||||||||||||||||||  ||| ||||||||| |||||| ||| | ||||||||    
T  4699598 cttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataagctctc 4699658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 35350720 - 35350684
Alignment:
Q  19 aaacaacttatgacatgcccatgagctgttttcagct 55  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  35350720 aaacaacttatgacatgtccataagctgttttcagct 35350684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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