View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0984-Insertion-2 (Length: 1117)
Name: NF0984-Insertion-2
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0984-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 990; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 990; E-Value: 0
Query Start/End: Original strand, 8 - 1091
Target Start/End: Complemental strand, 53075013 - 53073916
Alignment:
| Q |
8 |
aagacttgagttctcttcatgattacgctgattgacaatgatagtctgacaaaatactttttatactattatcaggaacaatcatgacaatttcaaaaga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53075013 |
aagacttgagttctcttcatgattacgctgattgacaatgatagtctgacaaaatactttttatactattatcaggaacaatcatgacaatttcaaaaga |
53074914 |
T |
|
| Q |
108 |
tagggtggttccatctccattgcctgatagctggaaattgaaagaaatatttgctactggaattgttcttggaggttatttagcactgatgactgtgata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53074913 |
tagggtggttccatctccattgcctgatagctggaaattgaaagaaatatttgctactggaattgttcttggaggttatttagcactgatgactgtgata |
53074814 |
T |
|
| Q |
208 |
ttcttttgggcaatgaaagaaaatgacttcttccctgtaagaaataatgagactggcctatattcaagttcttggtctggaccaaatatataaatactcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53074813 |
ttcttttgggcaatgaaagaaaatgacttcttccctgtaagaaataatgagactggcctatattcaagttcttggtctggaccaaatatataaatactcc |
53074714 |
T |
|
| Q |
308 |
ttgattatttttgcaggacaaatttggagttaggaagctgaatcatgatgaaatgatgtctgctttgtatctacaagttagtatagttagccaggctctg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53074713 |
ttgattatttttgcaggacaaatttggagttaggaagctgaatcatgatgaaatgatgtctgctttgtatctacaagttagtatagttagccaggctctg |
53074614 |
T |
|
| Q |
408 |
atttttgtaacccgttcccgtggttggtcgtttcttgaacgccctggagcgctattagtcattgctttctttattgctcaactggtaaggaatggttatg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53074613 |
atttttgtaacccgttcccgtggttggtcgtttcttgaacgccctggagcgctattagtcattgctttctttattgctcaactggtaaggaatggttatg |
53074514 |
T |
|
| Q |
508 |
cttcaatgttttattgtgtagaaaaggtggtgaaaggataataatgtcttgagcaatgtgtcttgcagattgctaccataatagcagtatatgccaactg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53074513 |
cttcaatgttttattgtgtagaaaaggtggtgaaaggataataatgtcttgagcaatgtgtcttgcagattgctaccataatagcagtatatgccaactg |
53074414 |
T |
|
| Q |
608 |
gggattcgcaaaggtacaaggaattggttggggttgggcaggagtaatctggctctacagcattgtcttctatattccactcgacgtgatgaagtttgcc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53074413 |
gggattcgcaaaggtacaaggaattggttggggttgggcaggagtaatctggctctacagcattgtcttctatattccactcgacgtgatgaagtttgcc |
53074314 |
T |
|
| Q |
708 |
atccgctacatattgagtggcaaggcttggaacaatctcctagacaacaaggtattgattgattgattcatt----cattaacctactctttttgtgttt |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
53074313 |
atccgctacatattgagtggcaaggcttggaacaatctcctagacaacaaggtattgattgattgattcattcattcattaacctactctttttgtgttt |
53074214 |
T |
|
| Q |
804 |
ctcaaaatagtgaatgaagatattcatgaatcggttgttttataatacgtgacagactgcattcaccaccaagaaagactatggaaaagaggagagggaa |
903 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53074213 |
ctcaaaatagtgaatgaagatattcatgaattggttgttttataatacgtgacagactgcattcaccaccaagaaagactatggaaaagaggagagggaa |
53074114 |
T |
|
| Q |
904 |
gctcaatgggcacatgctcagaggactctacatggacttcaaccaccagaaagttctggtattttc-atgag-agagcagttacagagaactgtccgaga |
1001 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
53074113 |
gctcaatgggcacatgctcagaggactctacatggacttcaaccaccagaaagttctggtattttcaatgagaagagcagttacagagaactgtccgaga |
53074014 |
T |
|
| Q |
1002 |
ttgctgagc-agcgaagagaagagctgaag-tgcaaggt-agcag-catg-ctgc--atcacttctgagaatac-aataaatgtataatcatcatcat |
1091 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| ||||| |||| |||| |||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
53074013 |
ttgctgagcaagcgaagagaagagctgaagttgcaaggtaagcagccatgcctgccattcacttctgagattacaaatatatgtataatcatcatcat |
53073916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 857 - 914
Target Start/End: Complemental strand, 48435246 - 48435189
Alignment:
| Q |
857 |
agactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggc |
914 |
Q |
| |
|
||||||||||||| || ||||| |||||||||| || |||||||| ||||||||||| |
|
|
| T |
48435246 |
agactgcattcacaacaaagaaggactatggaagaggagagagggaggctcaatgggc |
48435189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 15869706 - 15869877
Alignment:
| Q |
81 |
aggaacaatcatgacaatttcaaaagatagggtggttccatctccattgcctgatagctggaaattgaaagaaatatttgctactggaattgttcttgga |
180 |
Q |
| |
|
|||||||||||||||||||||||| || || || ||||||||| ||||||||||||||||| ||| |||||||||||| ||||| | | |||||| |
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|
| T |
15869706 |
aggaacaatcatgacaatttcaaaggacagagttaagccatctccaatgcctgatagctggaaactgagagaaatatttgcaactggtgtcatgcttgga |
15869805 |
T |
|
| Q |
181 |
ggttatttagcactgatgactgtgatattcttttgggcaatgaaagaaaatgacttcttccctgtaagaaat |
252 |
Q |
| |
|
||||| || ||| ||||||||||||||||||| |||| ||||||| | | | |||||||||||||||||| |
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|
| T |
15869806 |
ggttacttggcaatgatgactgtgatattcttctgggtggtgaaagacactaaattcttccctgtaagaaat |
15869877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 573 - 761
Target Start/End: Original strand, 15870367 - 15870555
Alignment:
| Q |
573 |
cagattgctaccataatagcagtatatgccaactggggattcgcaaaggtacaaggaattggttggggttgggcaggagtaatctggctctacagcattg |
672 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||| |||||||| ||||| || |
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|
| T |
15870367 |
cagattgctacattaatagcagtatatgccaactggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctggctttacagtatca |
15870466 |
T |
|
| Q |
673 |
tcttctatattccactcgacgtgatgaagtttgccatccgctacatattgagtggcaaggcttggaacaatctcctagacaacaaggta |
761 |
Q |
| |
|
| ||||||||||| || ||| | || |||||||| || ||||| ||||| ||||| ||||||| ||||| || || ||||||||| |
|
|
| T |
15870467 |
ttttctatattcctcttgacattatcaagtttgcaattcgctatggcttgagcggcaaagcttggacaaatcttcttgaaaacaaggta |
15870555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 880 - 942
Target Start/End: Original strand, 15870839 - 15870901
Alignment:
| Q |
880 |
gactatggaaaagaggagagggaagctcaatgggcacatgctcagaggactctacatggactt |
942 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |
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|
| T |
15870839 |
gactacggaaaagaggagagggaagctcaatgggcacatgctcaaaggacccttcatggactt |
15870901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 15870031 - 15870088
Alignment:
| Q |
367 |
ctgctttgtatctacaagttagtatagttagccaggctctgatttttgtaacccgttc |
424 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| |||| |||||||| ||||| |
|
|
| T |
15870031 |
ctgctttgtatctacaagttagtattgttagtcaggctttgatctttgtaactcgttc |
15870088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 625 - 682
Target Start/End: Complemental strand, 45196597 - 45196540
Alignment:
| Q |
625 |
aaggaattggttggggttgggcaggagtaatctggctctacagcattgtcttctatat |
682 |
Q |
| |
|
|||||||||| |||||||||||||| || || ||||||||||||||| | |||||||| |
|
|
| T |
45196597 |
aaggaattggatggggttgggcaggtgtcatttggctctacagcattattttctatat |
45196540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 856 - 914
Target Start/End: Complemental strand, 21979493 - 21979435
Alignment:
| Q |
856 |
cagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggc |
914 |
Q |
| |
|
|||||||||||||| || ||||||||||| || |||| |||||||| ||||||||||| |
|
|
| T |
21979493 |
cagactgcattcacaacaaagaaagactacggtaaaggagagagggaggctcaatgggc |
21979435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 855 - 944
Target Start/End: Original strand, 50277991 - 50278080
Alignment:
| Q |
855 |
acagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggcacatgctcagaggactctacatggacttca |
944 |
Q |
| |
|
||||||||| ||||| || |||||||||||||| ||||| ||||| |||||||| |||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
50277991 |
acagactgccttcacaacaaagaaagactatggcaaagaagagagagaagctcagtgggcaactgctcagaggactcttcatggtcttca |
50278080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 855 - 914
Target Start/End: Complemental strand, 1495455 - 1495396
Alignment:
| Q |
855 |
acagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggc |
914 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
1495455 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggc |
1495396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 1463250 - 1463311
Alignment:
| Q |
118 |
ccatctccattgcctgatagctggaaattgaaagaaatatttgctactggaattgttcttgg |
179 |
Q |
| |
|
||||||||| | ||||||||||||||| | || ||||||||||||||||| ||||| ||||| |
|
|
| T |
1463250 |
ccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttgg |
1463311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 418
Target Start/End: Complemental strand, 1496164 - 1496094
Alignment:
| Q |
348 |
aatcatgatgaaatgatgtctgctttgtatctacaagttagtatagttagccaggctctgatttttgtaac |
418 |
Q |
| |
|
|||| |||||| |||||| | ||||| |||||||||||||||||| | ||||| || || ||||||||||| |
|
|
| T |
1496164 |
aatcctgatgagatgatggcggctttatatctacaagttagtataataagccaagcactaatttttgtaac |
1496094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 855 - 912
Target Start/End: Complemental strand, 1490595 - 1490538
Alignment:
| Q |
855 |
acagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgg |
912 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||| ||||| ||||| ||||| |||||| |
|
|
| T |
1490595 |
acagactacattcactaacaagaaagactatggtaaagaagagagagaagcacaatgg |
1490538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 26791008 - 26791114
Alignment:
| Q |
118 |
ccatctccattgcctgatagctggaaattgaaagaaatatttgctactggaattgttcttggaggttatttagcactgatgactgtgatattcttttggg |
217 |
Q |
| |
|
|||||||||||||||||||| |||||| | || || |||||||||||||| ||||| ||||| |||| | ||||| ||||| || ||||| || |||| |
|
|
| T |
26791008 |
ccatctccattgcctgatagttggaaacttaaggagatatttgctactggtattgtgcttggcagttacatggcactaatgacagtcatatttttctggg |
26791107 |
T |
|
| Q |
218 |
caatgaa |
224 |
Q |
| |
|
||||||| |
|
|
| T |
26791108 |
caatgaa |
26791114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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