View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0984-Insertion-5 (Length: 884)
Name: NF0984-Insertion-5
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0984-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 286 - 884
Target Start/End: Original strand, 14946065 - 14946664
Alignment:
| Q |
286 |
atcaaatttattgcttataaaaataaaaagaaatcacttcatattgataatttgcatcttttaggctatgctctttgcaggatcaaactcaacagctgta |
385 |
Q |
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| T |
14946065 |
atcaaatttattgcttataaaagtaaaaagaaatcacttcatattgataatttgcatcttttaggctatgctctttgcaggatcaaactcaacagctgta |
14946164 |
T |
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| Q |
386 |
actttagaatgggcaatgtctaatttattaaaccatccagaagtgttgaaaaaagcaaaagaggaaatggacacttatataggacaagaccatttgttaa |
485 |
Q |
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| T |
14946165 |
actttagaatgggcaatgtctaatttattaaaccatccagaagtgttgaaaaaagcaaaagaggaaatggacacttatataggacaagaccatttgttaa |
14946264 |
T |
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| Q |
486 |
atgaggttgaccttccaaaacttccttaccttaagaaggtcgtcttagagacacttaggatgtaccctccagctccattgctatttccacacttgtcttc |
585 |
Q |
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| T |
14946265 |
atgaggttgaccttccaaaacttccttaccttaagaaggtcgtcctagagacacttaggatgtaccctccagctccattgctatttccacacttgtcttc |
14946364 |
T |
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| Q |
586 |
agatgacattgttatggaaggattcaatgttccacgtgacactattgtgcttactaatggttggtcaaggcaaagggaccctttggtgtggaatgaaccc |
685 |
Q |
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| T |
14946365 |
agatgacattgttatggaaggattcaatgttccacgtgacactattgtgcttactaatggttggtcaatgcaaagggaccctttggtgtggaatgaaccc |
14946464 |
T |
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| Q |
686 |
acacattttatacctgagaggtttgataaagaaggagaggagaaaaagttggttgtttttgggtttggaagaaggtcttgtccaggaaaggccatggctt |
785 |
Q |
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| T |
14946465 |
acacattttatacctgagaggtttgataaagaaggagaggagaagaagttggttgtttttgggtttggaagaaggtcttgtccaggaaaggccatggctt |
14946564 |
T |
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| Q |
786 |
tgcataatgtttcctttattttgggattattgattcaatgctttgattggaaacgagtgagtgaagcaaagattgatatgagtgatc-aaatttgttcac |
884 |
Q |
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| T |
14946565 |
tgcataacgtttcctttattttgggattattgattcaatgctttgattggaaacgagtgagtgaagcaaagattgatatgagtgatcaaaatttgttcac |
14946664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 14945993 - 14946058
Alignment:
| Q |
190 |
ctttcttcctacgatatatttgtagagtaaattgtctgactaaaaatagtagttaaatttgaagtt |
255 |
Q |
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| T |
14945993 |
ctttcttcctaagatatatttgtagagacaattgtctgactaaaaatagtagttaaatttgaagtt |
14946058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 772
Target Start/End: Complemental strand, 38975042 - 38974763
Alignment:
| Q |
493 |
tgaccttccaaaacttccttaccttaagaaggtcgtcttagagacacttaggatgtaccctccagctccattgctatttccacacttgtcttcagatgac |
592 |
Q |
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| T |
38975042 |
tgacctaccaaaactcccttaccttaaaaatatcatctatgagacacttaggttgtacactcctgctccattgtcattgccacactcttcttcagatgag |
38974943 |
T |
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| Q |
593 |
attgttatggaaggattcaatgttccacgtgacactattgtgcttactaatggttggtcaaggcaaagggaccctttggtgtggaatgaacccacacatt |
692 |
Q |
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| T |
38974942 |
tgtattattggagggtacaaagttccacgagacactatattgcttgttaatgcttgggccattcatagagaccctaagagttggagtgaagccacaagtt |
38974843 |
T |
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| Q |
693 |
ttatacctgagaggtttgataaagaaggagaggagaaaaagttggttgtttttgggtttggaagaaggtcttgtccagga |
772 |
Q |
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| T |
38974842 |
tcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccagga |
38974763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 805 - 867
Target Start/End: Complemental strand, 38974730 - 38974668
Alignment:
| Q |
805 |
tttgggattattgattcaatgctttgattggaaacgagtgagtgaagcaaagattgatatgag |
867 |
Q |
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| T |
38974730 |
tttgggtttattgattcaatgctttgattggaaaagaatgaatgaaaatgagattgatatgag |
38974668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 5893678 - 5893715
Alignment:
| Q |
389 |
ttagaatgggcaatgtctaatttattaaaccatccaga |
426 |
Q |
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| T |
5893678 |
ttagaatgggctatgtctaatttgttaaaccatccaga |
5893715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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