View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0984-Insertion-6 (Length: 858)
Name: NF0984-Insertion-6
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0984-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 41852004 - 41851650
Alignment:
| Q |
7 |
agaaaagaaaactaacttgtggcaccaacaaatgcgagcaaaaagtagaaaccgaagagggtgaggttaggagaagtttttgatttggtaatgaagtaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41852004 |
agaaaagaaaactaacttgtggcaccaacaaatgcgagcaaaaagtagaaaccgaagagggtgaggttaggagaagtttttgatttggtaatgaagtaca |
41851905 |
T |
|
| Q |
107 |
agaaaccaatataaggaaacaaagaaaacgcgaaaagttgagaggctatgctctgtgaatcaatggaaggtgcccatggatcaacacccagtggcaaccc |
206 |
Q |
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| T |
41851904 |
agaaaccaatgtaaggaaacaaagaaaaagcgaaaagttgagaagctatgctctgtgaatcaatggaaggtgcccatggatcaacacccagtggcaaccc |
41851805 |
T |
|
| Q |
207 |
acacacgataactgctctctttctaaggctgtttggttctctaattgttctgatgctgattaaatgaaaatcacgttgcaggaaggtagttgaaggtttg |
306 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41851804 |
acacacgataactgctctctttctaaggctgtttgattctctaattgttctgatgctgattaaatgaaaatcacgttgcaggaaggtagttgaaggtttg |
41851705 |
T |
|
| Q |
307 |
ataaatttaggggatttacagagagatagaacaggtaagtttaaagcagaagaag |
361 |
Q |
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| T |
41851704 |
ataaatttaggggatttacagagagatagaacaggtaagtttaaagcagaagaag |
41851650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 448 - 813
Target Start/End: Complemental strand, 41851568 - 41851207
Alignment:
| Q |
448 |
ggaaccgctcaatctgattctcaaacgggctggctgggccactatagcctaaaccaataacatcaagcctagtcaaaacttactcagtaaaccccttgaa |
547 |
Q |
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| T |
41851568 |
ggaaccgctcaatctgattctcaaacgggctggctgggccactatagcctaaaccaataacatcaagcctagtcaaaacttactcagtaaaccccttgaa |
41851469 |
T |
|
| Q |
548 |
atgctcacatgcccctcaaattttcaaaaatgcctctcgagacctaactaactgtcctgggcatagaagcaaaacacaggacaccagcagaacggaagta |
647 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41851468 |
atgcttacatgcccctcaaattttcaaaaatgcctctcgagacctaact----gtcctgagcatagaagcaaaacacaggacaccagcagaacggaagta |
41851373 |
T |
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| Q |
648 |
acaacatttggcataacatgctcaaagctcaaacacattgaacacttaaaattcattcaacattgaaaatgacataaaacttgtggcattcatctaaatt |
747 |
Q |
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| T |
41851372 |
acaacatttggcataacatgctcaaagctcaaacacattgaacacttaaaattcattcaacattgaaaatgacataaaacttgtgccattcatctaaatt |
41851273 |
T |
|
| Q |
748 |
caaaatcattcaacatttgtccaaaattttgacataaaattcatacatgattcaacctcaccaaca |
813 |
Q |
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| T |
41851272 |
caaaatcattcaacatttgtccaaaattttgacataaaattcatacatgattcaacctcaccaaca |
41851207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 678 - 751
Target Start/End: Complemental strand, 49559704 - 49559631
Alignment:
| Q |
678 |
aaacacattgaacacttaaaattcattcaacattgaaaatgacataaaacttgtggcattcatctaaattcaaa |
751 |
Q |
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| T |
49559704 |
aaacacattcaacactcaaaatttattcaacattcaaaatgacataaaacttgtgacattcaaataaattcaaa |
49559631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 680 - 751
Target Start/End: Complemental strand, 6562879 - 6562808
Alignment:
| Q |
680 |
acacattgaacacttaaaattcattcaacattgaaaatgacataaaacttgtggcattcatctaaattcaaa |
751 |
Q |
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||||||| |||||| |||||| ||| |||||| ||||||| |||||| ||||| |||||| ||||||||||| |
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| T |
6562879 |
acacattcaacactcaaaatttattgaacatttaaaatgatataaaatttgtgacattcaactaaattcaaa |
6562808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 722
Target Start/End: Complemental strand, 33229711 - 33229668
Alignment:
| Q |
679 |
aacacattgaacacttaaaattcattcaacattgaaaatgacat |
722 |
Q |
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|||||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
33229711 |
aacacattcaacactcaaaattcattcaacattcaaaatgacat |
33229668 |
T |
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