View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0984-Insertion-7 (Length: 801)
Name: NF0984-Insertion-7
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0984-Insertion-7 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 291 - 801
Target Start/End: Original strand, 47372952 - 47373453
Alignment:
| Q |
291 |
gaaaattcatcttcattttgtagttgttcgttttcatctatgacatcgtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttg |
390 |
Q |
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| T |
47372952 |
gaaaattcatcttcattttgtagttgttcgttttcatc---------gtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttg |
47373042 |
T |
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| Q |
391 |
tagtctcatttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaa |
490 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47373043 |
tagtctcatttgtcaaaaaatagagacgaagacagccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaa |
47373142 |
T |
|
| Q |
491 |
ccttccatctccacggtgggttctaacatgaagagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagct |
590 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47373143 |
ccttccatctccacggtgggttctaacatgaaaagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagct |
47373242 |
T |
|
| Q |
591 |
gctaaaacttgagaacaaggttgtctttgctccattgttcccattgaagacaacaatatgtcgttttctacagtgtcagtaccactctcgttgccaagat |
690 |
Q |
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| T |
47373243 |
gctaaaacttgagaacaaggttgtctttgctccattgttcccattgaagacaacaataagtcgttttctacaatgtcagtaccactctcgttgccaagat |
47373342 |
T |
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| Q |
691 |
tttctgtgcacaattcaagactctttggattcagaaccaatgaggaacacttctgttgagggggaagataggtggctgttgtggtttcnnnnnnngatgt |
790 |
Q |
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| T |
47373343 |
tttctgtgcacaattcaagactctttggactcagaaccaaagaggaacacttctgctgagggggaagataggtggctgttgtggtttctttttttgatgt |
47373442 |
T |
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| Q |
791 |
gttttgagcta |
801 |
Q |
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| T |
47373443 |
gttttgagcta |
47373453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 47372677 - 47372889
Alignment:
| Q |
16 |
acaaatacataatcttgttttttactaatacagataaatagatgggaaaatataaatagttttaggaagtagtagccacccaaaagttcacgttctcacc |
115 |
Q |
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| T |
47372677 |
acaaatacataatcttgttttttattaatacagataaatagatgggaaaatataaatagttttaggaagtagtagccacccaaaagttcacgttctcacc |
47372776 |
T |
|
| Q |
116 |
ccaatttaacgattcattgttttcattttcaccaccttctttgcttcttctaaccctactttccattctcaacttcatcccttcacactcacatgcaaca |
215 |
Q |
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| T |
47372777 |
ccaatttaacgattcattgttttcattttcaccaccttctttgcttcttctaaccctactttccattctcaacttcatcccttcacactcacttgcaaca |
47372876 |
T |
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| Q |
216 |
aaaacaccttggg |
228 |
Q |
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| T |
47372877 |
aaaacaccttggg |
47372889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 300 - 778
Target Start/End: Complemental strand, 47385974 - 47385499
Alignment:
| Q |
300 |
tcttcattttgtagttgttcgttttcatctatgacatcgtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcat |
399 |
Q |
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|||| ||| ||| ||| ||| ||||||||||||||||| ||| ||||||| ||| |||| ||||||||||| ||||||||||||||||||||||| |
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| T |
47385974 |
tctttattatgtggtttttcattttcatctatgacatcatcatcatcaacatcaacatcctcttcttgttc------cgggtcaaaacttgtagtctcat |
47385881 |
T |
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| Q |
400 |
ttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatc |
499 |
Q |
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| T |
47385880 |
ttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgatgtacttggtgggacctttgtgacttcaattactaacctaccatc |
47385781 |
T |
|
| Q |
500 |
tccacggtgggttctaacatgaagagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaact |
599 |
Q |
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| T |
47385780 |
ttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatact |
47385681 |
T |
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| Q |
600 |
tgagaacaaggttgtctttg---ctccattgttcccattgaagacaacaatatgtcgttttctacagtgtcagtaccactctcgttgccaagattttctg |
696 |
Q |
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| T |
47385680 |
ggactacaaggttctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactttcattaccaagattctccg |
47385581 |
T |
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| Q |
697 |
tgcacaattcaagactctttggattcagaaccaatgaggaacacttctgttgagggggaagataggtggctgttgtggtttc |
778 |
Q |
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| T |
47385580 |
tacataattcaaggctctttggactcatagccaaagaggaacgtttctgttgaggatgcacataggtggttgttgtggtttc |
47385499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 47386187 - 47386139
Alignment:
| Q |
111 |
tcaccccaatttaacgattcattgttttcattttcaccaccttctttgc |
159 |
Q |
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| T |
47386187 |
tcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc |
47386139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 47386237 - 47386204
Alignment:
| Q |
61 |
gaaaatataaatagttttaggaagtagtagccac |
94 |
Q |
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| T |
47386237 |
gaaaatataaatagttttaggaagtagtagccac |
47386204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 434 - 505
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
434 |
tctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacg |
505 |
Q |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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