View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0984_low_1 (Length: 294)
Name: NF0984_low_1
Description: NF0984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0984_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 35367781 - 35367990
Alignment:
| Q |
5 |
gtatacacaagaagaatctacgtgtgagtgtatcatttgtttagatgaatttgaagacaatgatcgccttggtaccctctctatttgttatcacacattt |
104 |
Q |
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| T |
35367781 |
gtatgcacaagaagaatctacgtgtgaatgtatcatttgtttagatgaatttgaagacaatgatcgccttggtaccctctctatttgttatcacacattt |
35367880 |
T |
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| Q |
105 |
catctcgattgcattgaggcttggcttcgtaaaaaccctaattgtcctttgtgtcgctctaactgttctctcaacccctctatgattatagatgtgacag |
204 |
Q |
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| T |
35367881 |
catctcgattgtattgaggtttggcttcgtaaaaaccccaattgtcctctgtgtcgctctaactgttctctcaatctctctatgattatagatgtgacac |
35367980 |
T |
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| Q |
205 |
agaggtcact |
214 |
Q |
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|||||||||| |
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| T |
35367981 |
agaggtcact |
35367990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 214
Target Start/End: Original strand, 35374756 - 35374931
Alignment:
| Q |
39 |
atttgtttagatgaatttgaagacaatgatcgccttggtaccctctctatttgttatcacacatttcatctcgattgcattgaggcttggcttcgtaaaa |
138 |
Q |
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| T |
35374756 |
atttgcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaa |
35374855 |
T |
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| Q |
139 |
accctaattgtcctttgtgtcgctctaactgttctctcaacccctctatgattatagatgtgacagagaggtcact |
214 |
Q |
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| T |
35374856 |
aacctaattgtcctctatgtcgctccagttgtcatctcaatcactctataattatagatgtgccggagagatcact |
35374931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 35356787 - 35356921
Alignment:
| Q |
29 |
tgagtgtatcatttgtttagatgaatttgaagacaatgatcgccttggtaccctctctatttgttatcacacatttcatctcgattgcattgaggcttgg |
128 |
Q |
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| T |
35356787 |
tgagtgcaccatttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcccacactttccatctcgcttgcattgatgcttgg |
35356886 |
T |
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| Q |
129 |
cttcgtaaaaaccctaattgtcctttgtgtcgctc |
163 |
Q |
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| T |
35356887 |
cttcataaacaacctaattgtcctctatgtcgctc |
35356921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 10696703 - 10696826
Alignment:
| Q |
40 |
tttgtttagatgaatttgaagacaatgatcgccttggtaccctctctatttgttatcacacatttcatctcgattgcattgaggcttggcttcgtaaaaa |
139 |
Q |
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| T |
10696703 |
tttgtttggatgaatttaaagacaatgatcgcattcgcaccctgcctctttgttcccacactttccatctcgtttgcattgaagcatggcttagtaaaca |
10696802 |
T |
|
| Q |
140 |
ccctaattgtcctttgtgtcgctc |
163 |
Q |
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||||| |||||| | |||||||| |
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| T |
10696803 |
acctaactgtcctatttgtcgctc |
10696826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 30812018 - 30812120
Alignment:
| Q |
105 |
catctcgattgcattgaggcttggcttcgtaaaaaccctaattgtcctttgtgtcgctctaactgt-tctctcaacccctctatgattatagatgtgaca |
203 |
Q |
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|||||| |||||||||| ||||| ||||||||||| ||||| || ||| | | |||||| | ||| |||||||| | |||| | ||||||||||||||| |
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| T |
30812018 |
catctcaattgcattgaagcttgacttcgtaaaaaacctaactgccctctctatcgctcaacatgtctctctcaatcactctgtaattatagatgtgaca |
30812117 |
T |
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| Q |
204 |
gag |
206 |
Q |
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||| |
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| T |
30812118 |
gag |
30812120 |
T |
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