View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0985_low_1 (Length: 398)
Name: NF0985_low_1
Description: NF0985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0985_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Complemental strand, 22416444 - 22416066
Alignment:
| Q |
15 |
tatcatagtaagcgacaactccaaggatctaaaattaagaattaagttgttttggtaagtccaatgcttatttgtgtctccaaacacgacctttattgta |
114 |
Q |
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| T |
22416444 |
tatcatagtaagcgacaactccaaggatctaaaattaagaattaagttgttttggtaagtccaatgcttatttgtgtctccaaacacgacctttattgta |
22416345 |
T |
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| Q |
115 |
gatccatagtacaccttcaaataaacaacaataattgaagtggcaaagaaacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagccct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416344 |
gatccatagtacaccttcaaataaacaacaataattgaagtggcaaagaaacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagccct |
22416245 |
T |
|
| Q |
215 |
tcactaacttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaacttccacacccttctt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416244 |
tcactaacttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaacttccacacccttctc |
22416145 |
T |
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| Q |
315 |
atccatcaattgcactaactctttagcacgatcaaccgatagatccccaccgttaatactcaccaataccctccaccct |
393 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416144 |
atccatcaattgcactaactctttagcacgatcagccaatagatccccaccgttaatactcaccaataccctccaccct |
22416066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 116 - 390
Target Start/End: Complemental strand, 22400507 - 22400235
Alignment:
| Q |
116 |
atccatagtacaccttcaaataaacaacaataattgaag-tggcaaagaaacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagccct |
214 |
Q |
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||||||| ||||| |||||||||| | ||||||| ||| | |||||||||||| || || |||| ||| |||||||||||| ||| ||||| || | |
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| T |
22400507 |
atccataatacacgttcaaataaaggaaaataattcaaggtagcaaagaaacgt-caaacatgtt--gaccctaagcatcgaactaggagatgaaacctt |
22400411 |
T |
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| Q |
215 |
tcactaacttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaacttccacacccttctt |
314 |
Q |
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|||| | || |||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| || || |||||||||||||| | |
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| T |
22400410 |
tcaccacctcaataaagttctttgctttggatagctcaaaaaactcaactccatgaaaaccatcttcttgaaaatccttcaccacttccacacccttttc |
22400311 |
T |
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| Q |
315 |
atccatcaattgcactaactctttagcacgatcaaccgatagatccccaccgttaatactcaccaataccctccac |
390 |
Q |
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|||| ||||| ||| ||||| ||| |||||||||| || |||| ||||| || ||||||||||| ||||||||| |
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| T |
22400310 |
ctccaacaatttcaccaactccttattacgatcaaccaatggatctccaccattcatactcaccaacaccctccac |
22400235 |
T |
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