View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0985_low_2 (Length: 251)
Name: NF0985_low_2
Description: NF0985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0985_low_2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 28834216 - 28834439
Alignment:
| Q |
29 |
aatactacatggtcctaggcaataaatataaagaccaaaagcaagaggacattcaagctaattaatccaattaattagccaaagattttgatgtttaaac |
128 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28834216 |
aatactacatggacctaggcaataaatataaagaccaaaagcatgaggacattcaagctaattaatccaattaattagccaaagaatttgatgtttaaac |
28834315 |
T |
|
| Q |
129 |
aattgtcagcaatatcatgtttcttgaataagttaaatgaattagaaagag-aaaagaagtcctttcaagatgagtagatgagaagtagatgcaaggatt |
227 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28834316 |
aattgccaacaatatcatgtttcttgaataagttaaatgaattagaaagagaaaaagaagtcctttcaagatgagtagatgagaagtagatgcaaggatt |
28834415 |
T |
|
| Q |
228 |
gattctcctcttcaaactatcttc |
251 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28834416 |
gattctcctcttcaaactatcttc |
28834439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University