View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0987_low_1 (Length: 666)
Name: NF0987_low_1
Description: NF0987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0987_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 109 - 582
Target Start/End: Complemental strand, 9921848 - 9921375
Alignment:
| Q |
109 |
ctcaagtttttccatatatgacatttagtaattactcaaatcaccattgaaacccaaatgaaataaaacaaccttaaaaagaaggaactaacatactttc |
208 |
Q |
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| T |
9921848 |
ctcaagtttttccatatatgacattcagtaattactcaaatcaccattgaaacccaaatgaaataaaacaaccttaaaaagaaggaactaacatactttc |
9921749 |
T |
|
| Q |
209 |
aaataccaccaatttatgaagttttaagcacaacttattttaaccatatccataatcattacnnnnnnncttttcttccataagcacattttattgtacg |
308 |
Q |
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| T |
9921748 |
aaatagcaccaatttatgaagttttaagcacaacttaatttaaccatatccataactattacaaaaaaacttttcttccataagcacattttattgtacg |
9921649 |
T |
|
| Q |
309 |
atagatagggcatcacattaattgcatatcaatattggccattaccactgctcgagccaccagcacccaacccatccatgttgaatccacaagcagttga |
408 |
Q |
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| T |
9921648 |
atagatagggcatcacattaattgcatatcaatattggccattaccactgctcgagccaccagtacccgacccatccatgttgaatccacaagcagttga |
9921549 |
T |
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| Q |
409 |
catgccactgaattgagcctcatggttgcgatagttttggaggagaagagatagaggaccaacatagtcctcaaaccctaacctacccatggcccgtatt |
508 |
Q |
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| T |
9921548 |
catgccactgaattgagcctcatggttgcgatagttttggaggagaagagatagaggaccaacatagtcctcaaaccctaacctacccatggcccgtatt |
9921449 |
T |
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| Q |
509 |
atatcctcaccactaatgatctttcgactctcttcattgcatttatcaacagcctcagtggtgatgatgtccat |
582 |
Q |
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| T |
9921448 |
atatcttcaccgctaatgatctttcgactctcttcattgcatttctcaacagcctcagtggtgatgatgcccat |
9921375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 433 - 565
Target Start/End: Complemental strand, 9911448 - 9911315
Alignment:
| Q |
433 |
gttgcgatagttttggaggagaagagatagaggaccaacatagtcctcaaaccctaacctacccatggccc-gtattatatcctcaccactaatgatctt |
531 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||| |
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| T |
9911448 |
gttgcgatagttttggaggagaagagatagaggaccaacatagtcctcaaaccctaacctacccatggcccagatttaaatctttaccactaatgatctt |
9911349 |
T |
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| Q |
532 |
tcgactctcttcattgcatttatcaacagcctca |
565 |
Q |
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| T |
9911348 |
tcgactctcttcattgcatttatcaacaacctca |
9911315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 9911568 - 9911488
Alignment:
| Q |
181 |
cttaaaaagaaggaactaacatactttcaaataccaccaatttatgaagttttaagcacaacttattttaaccatatccata |
262 |
Q |
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| T |
9911568 |
cttaaaaagaacgaaccaacatactttcaacg-ccaccaattcatgaagttttaagcacaacttattttaaccatatccata |
9911488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9921958 - 9921907
Alignment:
| Q |
1 |
tgtcaaacacttatcaatattgaaatgacattccatagacaatgatgattat |
52 |
Q |
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| T |
9921958 |
tgtcaaacacttatcaatattgaagtgacattctatagacaatgatgattat |
9921907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 9911491 - 9911449
Alignment:
| Q |
333 |
catatcaatattggccattaccactgctcgagccaccagcacc |
375 |
Q |
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| T |
9911491 |
catatcaatgttggccattgccactgctcgagccactagcacc |
9911449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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