View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0987_low_3 (Length: 583)
Name: NF0987_low_3
Description: NF0987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0987_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 7 - 554
Target Start/End: Original strand, 36746825 - 36747364
Alignment:
| Q |
7 |
tccaacaaaatgagagggaacttcaacctgcacaaataaattagatctacctattaagcaacagaataacactataaatcttaaatcaagataaataaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746825 |
tccaacaaaatgagagggaacttcaacctgcacaaataaattagatctacctattaagcaacagaataacactataaatcttaaatcaagataaataaca |
36746924 |
T |
|
| Q |
107 |
ttggctaaaattctcaannnnnnnaccttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctg |
206 |
Q |
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| T |
36746925 |
ttggctaaaattctcaatttttttaccttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctg |
36747024 |
T |
|
| Q |
207 |
tgaactcttgaccactcttatttttgtagttcacacctttgatagttccattttcttcaagtaacgatgtaacggttccttgttctaatttaacactgca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36747025 |
tgaactcttgaccactcttatttttgtagttcacacctttgatagttccattttcttcaagtaacgatgtaacggttccttgttctaatttaacactgca |
36747124 |
T |
|
| Q |
307 |
ttaatgcaagaaggattcaataaaacttaatcattgttagtgttgaagttcatatatgtaaatatgtaatatatacaacaaatacaatttgtatacgttg |
406 |
Q |
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| T |
36747125 |
ttaatgcaagaaggattcaataaaacttaatcattgttagtgttgaagttcat--------atatgtaatatatacaacaaatacaatttgtatacgttg |
36747216 |
T |
|
| Q |
407 |
gaatagttgaagccttttctcgcattctctgtatgaaacgaccattgtgaaaacttcttccagatacatcagagtcgaacttttccaagggataagacag |
506 |
Q |
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| T |
36747217 |
gaatagttgaagccttttctcgcattctctgtatgaaacgaccattgtgaaaacttcttccagatacatcagagtcgaacttttccaagggataagacag |
36747316 |
T |
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| Q |
507 |
tttggtatttttcccatccttataaagtgcatagccaaacactctttg |
554 |
Q |
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| T |
36747317 |
tttggtatttttcccatccttataaagtgcatagccaaacactctttg |
36747364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 414 - 551
Target Start/End: Original strand, 12252535 - 12252672
Alignment:
| Q |
414 |
tgaagccttttctcgcattctctgtatgaaacgaccattgtgaaaacttcttccagatacatcagagtcgaacttttccaagggataagacagtttggta |
513 |
Q |
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| T |
12252535 |
tgaagccttctctcgcattttctgtatgaaacgaccattgtgaaaacttcttccagaaacatcagcattaaaattttctaagggataagagagcttgata |
12252634 |
T |
|
| Q |
514 |
tttttcccatccttataaagtgcatagccaaacactct |
551 |
Q |
| |
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| T |
12252635 |
ttttttccatccttataaagtgcataaccaaacactct |
12252672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 131 - 303
Target Start/End: Original strand, 12251744 - 12251916
Alignment:
| Q |
131 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactcttgaccactcttatttt |
230 |
Q |
| |
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|||||||| || |||||||||| ||||||||| |||||||| ||||||||||| || ||||||||||||||| | |||||||||| |||||||| |||| |
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| T |
12251744 |
accttaggtttgcaaagagaactcctcaagtttgaaaaacatccatcacatacaatagtgagaggagccttttcattgaactcttgtccactcttgtttt |
12251843 |
T |
|
| Q |
231 |
tgtagttcacacctttgatagttccattttcttcaagtaacgatgtaacggttccttgttctaatttaacact |
303 |
Q |
| |
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|||| ||||| ||| |||| |||||||| ||||| ||| ||||| || ||||||||||||||||| ||||| |
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| T |
12251844 |
tgtaattcacccctatgatgcttccatttatttcaactaaagatgtgacagttccttgttctaattttacact |
12251916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 131 - 303
Target Start/End: Complemental strand, 12404242 - 12404070
Alignment:
| Q |
131 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactcttgaccactcttatttt |
230 |
Q |
| |
|
|||||||| || |||||||||| |||||| || |||||||| ||||| ||||| || ||||||||||||||| | ||||||||||| |||||||| |||| |
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| T |
12404242 |
accttaggtttgcaaagagaactcctcaaattagaaaaacagccatcgcatacaatagtgagaggagccttttcagtgaactcttgtccactcttgtttt |
12404143 |
T |
|
| Q |
231 |
tgtagttcacacctttgatagttccattttcttcaagtaacgatgtaacggttccttgttctaatttaacact |
303 |
Q |
| |
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|||| ||||| ||| ||| ||||||||| ||||| || ||||| || ||||||||||||||||| ||||| |
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| T |
12404142 |
tgtaattcacccctacgatgcttccatttttttcaaccaaagatgtgacagttccttgttctaattttacact |
12404070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 414 - 551
Target Start/End: Complemental strand, 12402504 - 12402367
Alignment:
| Q |
414 |
tgaagccttttctcgcattctctgtatgaaacgaccattgtgaaaacttcttccagatacatcagagtcgaacttttccaagggataagacagtttggta |
513 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||||||||||| ||||| ||||||||||| || ||| || || ||||| ||||||||||||| ||| || |
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| T |
12402504 |
tgaagccttctctcgcattttctttataaaacgaccattatgaaagcttcttccagaaacgtcaacgttaaaattttctaagggataagacaacttgata |
12402405 |
T |
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| Q |
514 |
tttttcccatccttataaagtgcatagccaaacactct |
551 |
Q |
| |
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|| || |||||||||||||| ||||| ||||| ||||| |
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| T |
12402404 |
ttctttccatccttataaagagcataaccaaagactct |
12402367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 424 - 550
Target Start/End: Original strand, 4768096 - 4768222
Alignment:
| Q |
424 |
tctcgcattctctgtatgaaacgaccattgtgaaaacttcttccagatacatcagagtcgaacttttccaagggataagacagtttggtatttttcccat |
523 |
Q |
| |
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|||||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||| |||| |||||||||||||||||||| || |||| |||||| | |
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| T |
4768096 |
tctcgcatcctctgaataaaacgcccattgtgaaagcttctgccagagacatctgagtgaaacttttccaagggataagagagacgagtatgtttcccgt |
4768195 |
T |
|
| Q |
524 |
ccttataaagtgcatagccaaacactc |
550 |
Q |
| |
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||||| |||| ||||| |||||||||| |
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| T |
4768196 |
ccttaaaaagagcataaccaaacactc |
4768222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 269
Target Start/End: Original strand, 4767451 - 4767589
Alignment:
| Q |
131 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactcttgaccactcttatttt |
230 |
Q |
| |
|
|||||||| || ||||||||||| | |||||| || ||||| |||||||| || ||||| |||||||| | |||||| || | |||||| ||||| | |
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| T |
4767451 |
accttagggttgcaaagagaacgacgcaagtttgagaaacagccatcacaaacaatggtaagaggagcatatgctgtcaatgcctgaccatctttattct |
4767550 |
T |
|
| Q |
231 |
tgtagttcacacctttgatagttccattttcttcaagta |
269 |
Q |
| |
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|||| | |||||||||||| || || || |||||||||| |
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| T |
4767551 |
tgtattgcacacctttgattgtccccttctcttcaagta |
4767589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 424 - 549
Target Start/End: Complemental strand, 47790691 - 47790566
Alignment:
| Q |
424 |
tctcgcattctctgtatgaaacgaccattgtgaaaacttcttccagatacatcagagtcgaacttttccaagggataagacagtttggtatttttcccat |
523 |
Q |
| |
|
|||| ||||||| | || ||||| ||||||||||| |||||||||| | ||| |||| |||||||||||||||||||| ||| | |||| |||||||| |
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| T |
47790691 |
tctctcattctcagaataaaacgcccattgtgaaagcttcttccagcgatatctgagtgaaacttttccaagggataagagagtctcgtatgtttcccat |
47790592 |
T |
|
| Q |
524 |
ccttataaagtgcatagccaaacact |
549 |
Q |
| |
|
|||| |||| ||||| ||||||||| |
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|
| T |
47790591 |
ccttgaaaagagcatacccaaacact |
47790566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 47791191 - 47791127
Alignment:
| Q |
131 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagagg |
195 |
Q |
| |
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||||||||||||||||||||||| | |||||| || |||||||||||||| || ||||| ||||| |
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|
| T |
47791191 |
accttaggattacaaagagaacggcgcaagtttgagaaacaaccatcacaaacaatggtaagagg |
47791127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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