View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0987_low_4 (Length: 552)
Name: NF0987_low_4
Description: NF0987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0987_low_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 6486084 - 6485626
Alignment:
| Q |
1 |
aatccgtgtttggaaagtttctctcaagaaccctagcgttcacaaacgtgccggaacattaccaacactcaaagacatcttcaaaagctcgattatacca |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
6486084 |
aatccgtgtttggaaagtctctctcaagaaccctagcgttcacaaacgtgctggaacattaccaacactcaaagacatcttcaaaagctcaattaaacca |
6485985 |
T |
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| Q |
101 |
agcaattgtgtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagcctttctccagacaaaacctacctct |
200 |
Q |
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| T |
6485984 |
agcaattatgtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagtctttctccagacaaaacctacctct |
6485885 |
T |
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| Q |
201 |
actctgcttcatgggacagaatcgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccgtcgt |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485884 |
actctgcttcatgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccgtcgt |
6485785 |
T |
|
| Q |
301 |
ttgtggaaacgacggaattgttttcgctggttcagcagacggaacagttaaagtgtggcgaagagaaccacgtggtaaagcaacaaaacatgtaatggtt |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485784 |
ttgtggaaacgacggaattgttttctctggttcagcagacggaacagttaaagtgtggcgaagagaaccacgtggtaaagcaacaaaacatgtaatggtt |
6485685 |
T |
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| Q |
401 |
aaacaacttttaaaacaagaatgtgcagtaactgcttgagcaattgacagcacaggttc |
459 |
Q |
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| T |
6485684 |
aaacaacttttaaaacaagaatgtgcagtaactgctttagcaattgacagcacaggttc |
6485626 |
T |
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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 509 - 552
Target Start/End: Complemental strand, 6714153 - 6714110
Alignment:
| Q |
509 |
gtgaaagtggttgtttaatatcttggtataggttcttgctttgc |
552 |
Q |
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| T |
6714153 |
gtgaaagtggttgtttaatatcttggtataggttcttgctttgc |
6714110 |
T |
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