View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0987_low_5 (Length: 424)
Name: NF0987_low_5
Description: NF0987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0987_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 50880197 - 50880380
Alignment:
| Q |
237 |
aaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50880197 |
aaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctc |
50880296 |
T |
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| Q |
337 |
taacatcctcatt---ctccttctcattcacaacatcccccaaatcttctcacctaattatcttctcctgttcctttcatctca |
417 |
Q |
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| T |
50880297 |
caacatcctcattctactccttcccattcacaacatcccccaaatattctcacctaattctcttctcttgttcctttcatctca |
50880380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 417
Target Start/End: Complemental strand, 11348269 - 11348107
Alignment:
| Q |
250 |
aacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctctaacatcctcatt |
349 |
Q |
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|||||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11348269 |
aacagtgattgaattgaatcaagcaaacatttcacaaaagcagtagcaataactccttaacttcaacaaccatggcagcatcttctctaacatcctcatt |
11348170 |
T |
|
| Q |
350 |
---ctccttctcattcacaacatcccccaaatcttctcacctaattatcttctcctgttcctttcatctca |
417 |
Q |
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| T |
11348169 |
ctactccttcccattcataacatcccccaa--------acctaattctcttctcttgttcctttcatctca |
11348107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 21728274 - 21728342
Alignment:
| Q |
269 |
caaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctct |
337 |
Q |
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| T |
21728274 |
caaacaagcatttcacaaacacagtagcaagaacttcttaacttcaacaaccatggcagcatctactct |
21728342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 275 - 417
Target Start/End: Complemental strand, 18852157 - 18852012
Alignment:
| Q |
275 |
agcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctctaacatcctcatt---ctccttctcattcacaacatcc |
371 |
Q |
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|||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
18852157 |
agcattgcacaacaacagtagcaatcactccttaacttcaacaaccatggcagcatcttctctaacatcctcattctactccttcccattcacaacatcc |
18852058 |
T |
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| Q |
372 |
cccaaatcttctcacctaattatcttctcctgttcctttcatctca |
417 |
Q |
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| T |
18852057 |
cccaaatcttctcacctaattcccttctattgttcctttcatctca |
18852012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 12630975 - 12631042
Alignment:
| Q |
350 |
ctccttctcattcacaacatcccccaaatcttctcacctaattatcttctcctgttcctttcatctca |
417 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
12630975 |
ctccttcccattcacaacatcccccaaatcttctcacctaattctcctctcctattcctttcatctca |
12631042 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 48081157 - 48081067
Alignment:
| Q |
233 |
acagaaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatg |
323 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
48081157 |
acagaaaacaatcttttaacggtgattgaattgaatcaaacaagcatttcacaaaaacagtaacaataactccttaacttcaacaaccatg |
48081067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Complemental strand, 48080526 - 48080492
Alignment:
| Q |
317 |
aaccatggcagcatcttctctaacatcctcattct |
351 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
48080526 |
aaccatggcatcatcttctctaacatcctcattct |
48080492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 538429 - 538360
Alignment:
| Q |
29 |
atcaagcacgaacagcttaaagtttgcgtaaacctcccaaccacgagaaagcttctcagtatctgctatt |
98 |
Q |
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| T |
538429 |
atcaagcacgaacagcttaaagtttacgtaaacctcccaaccgcgagaaagcttctcagtatctgctatt |
538360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 36808357 - 36808393
Alignment:
| Q |
239 |
aacaatcttttaacagtgattgaattgaatcaaacaa |
275 |
Q |
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|||||||||| || ||||||||||||||||||||||| |
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| T |
36808357 |
aacaatctttcaagagtgattgaattgaatcaaacaa |
36808393 |
T |
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