View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0987_low_6 (Length: 306)
Name: NF0987_low_6
Description: NF0987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0987_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 49290880 - 49290605
Alignment:
| Q |
1 |
caaagaacttaacaaataaagatataattggaaaatctgatccttttgctgtggtatttgtacgcccactccgtgacaaaaccaaaaccagtaaaataat |
100 |
Q |
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| T |
49290880 |
caaagaacttatcaaataaagatataattggaaaatctgatccttttgctgtggtatttgtacgcccactccgtgacaaaaccaaaaccagtaaaataat |
49290781 |
T |
|
| Q |
101 |
tgtaagtccctatttattattgatttgtttctttatcatnnnnnnnnnnnnnnnngttgcaaatcataatataattattggtcattctcagaacaaccag |
200 |
Q |
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| T |
49290780 |
tgtaagtccctatttatt-------tgtttctttatcattgtgtgtgtgtgtg--gttgcaaatcataatataattattggtcatgctcagaacaaccag |
49290690 |
T |
|
| Q |
201 |
ttgaacccaatatggaatgagcactttgaattcattattgaagacgaatcaacacaacacttgaccataagaatctttgatgatg |
285 |
Q |
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| T |
49290689 |
ttgaacccaatatggaatgagcactttgaattcattattgaagacgaatcaacacaacacttgaccataagaatctttgatgatg |
49290605 |
T |
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