View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0987_low_8 (Length: 257)

Name: NF0987_low_8
Description: NF0987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0987_low_8
NF0987_low_8
[»] chr3 (4 HSPs)
chr3 (1-239)||(11897167-11897405)
chr3 (26-239)||(26432588-26432801)
chr3 (54-138)||(23424570-23424654)
chr3 (47-96)||(49149802-49149851)
[»] chr8 (3 HSPs)
chr8 (1-239)||(23132475-23132713)
chr8 (47-138)||(26587289-26587380)
chr8 (76-234)||(14760016-14760174)
[»] chr1 (4 HSPs)
chr1 (1-239)||(20284868-20285106)
chr1 (38-147)||(50236550-50236659)
chr1 (54-135)||(50451967-50452048)
chr1 (38-96)||(23465403-23465461)
[»] chr2 (11 HSPs)
chr2 (1-239)||(14653570-14653808)
chr2 (38-147)||(16322502-16322611)
chr2 (59-132)||(35135219-35135292)
chr2 (59-132)||(40328252-40328325)
chr2 (59-132)||(3779048-3779121)
chr2 (59-135)||(573266-573342)
chr2 (28-135)||(26791364-26791471)
chr2 (54-140)||(42403209-42403295)
chr2 (59-120)||(19265490-19265551)
chr2 (35-135)||(177549-177649)
chr2 (84-135)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (45-135)||(75967-76057)
[»] chr5 (3 HSPs)
chr5 (29-135)||(32874457-32874563)
chr5 (60-135)||(7817210-7817285)
chr5 (38-140)||(6641008-6641110)
[»] chr4 (3 HSPs)
chr4 (26-132)||(54477407-54477513)
chr4 (35-138)||(46784469-46784572)
chr4 (54-135)||(3881787-3881868)
[»] chr6 (4 HSPs)
chr6 (38-138)||(24990660-24990760)
chr6 (54-138)||(24893833-24893917)
chr6 (28-135)||(27852952-27853059)
chr6 (38-144)||(13599639-13599745)
[»] chr7 (4 HSPs)
chr7 (38-141)||(16769956-16770059)
chr7 (38-137)||(27781628-27781727)
chr7 (62-132)||(1353794-1353864)
chr7 (47-135)||(1579159-1579247)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 11897167 - 11897405
Alignment:
Q  1 catgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897167 catgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttg 11897266  T
Q  101 tccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11897267 tccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcacccatccaaatcacccctacgg 11897366  T
Q  201 ggccgcatttatcccatctcctatttgcagatgatgtcc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11897367 ggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 26432801 - 26432588
Alignment:
Q  26 tactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgca 125  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||    
T  26432801 tactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtctccgacaaggtgatccattgtccccttatctcttcatcatttgca 26432702  T
Q  126 tggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacggggccgcatttatcccatctcctatt 225  Q
    |||||||||| || |||||||| ||||| || |||  |||||||||||||| ||| || |||||||| ||||||||||||||||||||||| ||||| ||    
T  26432701 tggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaaccgattcaaatcactcctacggggccgcatttatcccacctcctttt 26432602  T
Q  226 tgcagatgatgtcc 239  Q
    |||| |||||||||    
T  26432601 tgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 23424570 - 23424654
Alignment:
Q  54 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 138  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424570 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 49149851 - 49149802
Alignment:
Q  47 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 96  Q
    ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  49149851 aacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 49149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23132713 - 23132475
Alignment:
Q  1 catgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23132713 catgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatacgttg 23132614  T
Q  101 tccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23132613 tccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaaatcacccctacgg 23132514  T
Q  201 ggccgcatttatcccatctcctatttgcagatgatgtcc 239  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  23132513 ggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 26587289 - 26587380
Alignment:
Q  47 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 138  Q
    ||||| ||||| || ||||||||| |||||||||||||||||||||| || ||||| || || || ||||| ||||| ||||| || |||||    
T  26587289 aacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaactttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 234
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  76 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgg 175  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   |||||| || ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  176 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 234  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

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Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20284868 - 20285106
Alignment:
Q  1 catgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  20284868 catgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcctgcgacaaggtgatccgttg 20284967  T
Q  101 tccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20284968 tccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaaatcacccctacgg 20285067  T
Q  201 ggccgcatttatcccatctcctatttgcagatgatgtcc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20285068 ggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 50236659 - 50236550
Alignment:
Q  38 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 137  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |    
T  50236659 tggaacgggaacaagatgccccctttcaagcctactcatggcctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactat 50236560  T
Q  138 cagctgctat 147  Q
    ||| ||||||    
T  50236559 cagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 50451967 - 50452048
Alignment:
Q  54 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 135  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451967 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  38 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 96  Q
    ||||| || ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14653808 - 14653570
Alignment:
Q  1 catgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14653808 catgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcctccaacaaggtgatccgttg 14653709  T
Q  101 tccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacgg 200  Q
    ||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  14653708 tccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcacccatccaaatcactcctacgg 14653609  T
Q  201 ggccgcatttatcccatctcctatttgcagatgatgtcc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14653608 ggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  38 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 137  Q
    ||||| || |||||| |||| |||||||||||  |||||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  138 cagctgctat 147  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 35135292 - 35135219
Alignment:
Q  59 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 132  Q
    |||||||||||| ||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135292 cctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 40328252 - 40328325
Alignment:
Q  59 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 132  Q
    |||||||||||| ||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328252 cctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 3779121 - 3779048
Alignment:
Q  59 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 132  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779121 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 573266 - 573342
Alignment:
Q  59 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 135  Q
    ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573266 ccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 26791364 - 26791471
Alignment:
Q  28 ctctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 127  Q
    |||||| |||||||| || || | |||||| |||||| ||||| ||||||||||| | || ||||||||| | ||||| || ||||| || |||||||||    
T  26791364 ctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcaggcagggtgatccgctttccccgtacctttttattctttgcatg 26791463  T
Q  128 gaaaagct 135  Q
    || |||||    
T  26791464 gagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  54 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 140  Q
    |||| |||||||||||  ||||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 19265490 - 19265551
Alignment:
Q  59 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 120  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265490 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 177549 - 177649
Alignment:
Q  35 ctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 134  Q
    |||||||| || ||||| | ||| ||| |||||||| ||||||| ||  |||||||||| || ||||| ||||| || |||||| | |||||||||||||    
T  177549 ctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaaggtgaccctttgtctccttacctattcatcatctgcatggaaaagc 177648  T
Q  135 t 135  Q
    |    
T  177649 t 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  84 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 135  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  45 ggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 135  Q
    |||||||| ||||  | ||||||||| ||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  29 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 128  Q
    ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  129 aaaagct 135  Q
    |||||||    
T  32874463 aaaagct 32874457  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 7817210 - 7817285
Alignment:
Q  60 ctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 135  Q
    ||||||||||| ||||||| ||| |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817210 ctttcaagcctactcatggtctcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 6641110 - 6641008
Alignment:
Q  38 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 137  Q
    |||||||| |||||  || | |||||||||||  |||||||||||||| ||||||||||| | || || || || |||||  | ||||||||||| ||||    
T  6641110 tggaacggaaacaaaatgtcccctttcaagcccactcatggcctccgaaaaggtgatccgctctctccctacctcttcattatgtgcatggaaaaacttt 6641011  T
Q  138 cag 140  Q
    |||    
T  6641010 cag 6641008  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 54477513 - 54477407
Alignment:
Q  26 tactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgca 125  Q
    |||| ||| |||||||| || |||||| | ||  ||||||||||| | ||||| || || ||||||||||| |||||||||||||| ||||| |||||||    
T  54477513 tactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtctgcgccaaggtgatcctttgtccccttatctcttcattctttgca 54477414  T
Q  126 tggaaaa 132  Q
    |||||||    
T  54477413 tggaaaa 54477407  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 46784572 - 46784469
Alignment:
Q  35 ctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 134  Q
    |||||||| || || || |||||||||||||| ||| ||||||||||  |||||||||||||  | || || || || ||||||||||||||| |||| |    
T  46784572 ctttggaatggaaataaattgccgcctttcaaacctactcatggccttagacaaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaac 46784473  T
Q  135 tttc 138  Q
    ||||    
T  46784472 tttc 46784469  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 3881787 - 3881868
Alignment:
Q  54 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 135  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881787 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 24990760 - 24990660
Alignment:
Q  38 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 137  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| |||||||    
T  24990760 tggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagcttt 24990661  T
Q  138 c 138  Q
    |    
T  24990660 c 24990660  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 24893917 - 24893833
Alignment:
Q  54 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 138  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893917 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 27853059 - 27852952
Alignment:
Q  28 ctctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 127  Q
    |||||| ||||||||||| |||||  ||||  ||||||||||||||||||| ||  ||||||| || || || || |||||  | ||||||||||| |||    
T  27853059 ctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgtatg 27852960  T
Q  128 gaaaagct 135  Q
    ||||||||    
T  27852959 gaaaagct 27852952  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  38 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 137  Q
    ||||| || |||||||| ||||  ||||||||| ||||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  138 cagctgc 144  Q
    |||||||    
T  13599739 cagctgc 13599745  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  38 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 137  Q
    ||||| || ||||| ||||||| |||||| ||| ||||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  138 cagc 141  Q
    ||||    
T  16769959 cagc 16769956  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 27781727 - 27781628
Alignment:
Q  38 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 137  Q
    ||||||||||||||  |||| || || |||||  ||||||||||| |||||||||| ||  | || ||||| || |||||||| |||||||| |||||||    
T  27781727 tggaacgggaacaaaatgcctccatttaagccaactcatggcctcagacaaggtgaccctctttcaccttacctcttcatcctctgcatggagaagcttt 27781628  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 1353864 - 1353794
Alignment:
Q  62 ttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 132  Q
    ||||||||| |||||||||||  ||||||||||||  | || || ||||||||||| ||||| ||||||||    
T  1353864 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaa 1353794  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 1579247 - 1579159
Alignment:
Q  47 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 135  Q
    ||||||||||| || ||  | ||| ||||||| ||| |||| ||||||||| | |||||||| || || || |||||||||||||||||    
T  1579247 aacaagttgcctccctttcatcctactcatgggctcagacagggtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

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