View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0988_low_1 (Length: 460)

Name: NF0988_low_1
Description: NF0988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0988_low_1
NF0988_low_1
[»] chr5 (8 HSPs)
chr5 (1-445)||(9866410-9866867)
chr5 (218-348)||(12531523-12531653)
chr5 (218-348)||(12546966-12547096)
chr5 (271-335)||(38735561-38735625)
chr5 (262-328)||(9870032-9870098)
chr5 (218-325)||(9894697-9894803)
chr5 (351-430)||(9894578-9894654)
chr5 (218-302)||(12538675-12538759)
[»] chr2 (3 HSPs)
chr2 (218-348)||(13576379-13576509)
chr2 (248-328)||(34562649-34562729)
chr2 (253-328)||(34571448-34571523)
[»] chr8 (5 HSPs)
chr8 (222-335)||(43479645-43479758)
chr8 (222-320)||(38799554-38799652)
chr8 (222-296)||(38807079-38807153)
chr8 (222-320)||(38821865-38821963)
chr8 (262-335)||(26592212-26592285)
[»] chr7 (3 HSPs)
chr7 (221-348)||(3929931-3930058)
chr7 (253-335)||(21317618-21317700)
chr7 (262-328)||(3928620-3928686)
[»] scaffold0197 (1 HSPs)
scaffold0197 (253-348)||(31042-31137)
[»] chr4 (3 HSPs)
chr4 (223-320)||(24860605-24860702)
chr4 (283-335)||(53290780-53290832)
chr4 (256-335)||(40036080-40036159)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 9866410 - 9866867
Alignment:
Q  1 cacataagagttatgttct-taagagtatggagcaaccaaacactctaatctcaaagtaggaaattcatgaagtagcaaagttactaaatctatgaagga 99  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9866410 cacataagagttatgttcagtaagagtatggagcaaccaaacactctaatctaaaagtaggaaattcatgaagtagcaaagttactaaatctatgaagga 9866509  T
Q  100 atcattcaaatgttcctagctcattcattcaaaggttccttgttcattcataaataatccaactcaacactctaaaaagttaaccatttaaatagaatag 199  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9866510 atcattcaaatgttcctagctcat----tcaaaggttccttgttcattcataaataatccaactcaacactctaaaaagttaaccatttaaatagaatag 9866605  T
Q  200 aaaacacatctgaatcagaaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9866606 aaaacacatctgaatcagaaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagc 9866705  T
Q  300 acaaaggttagtatcttcaaacaaaccaaaaagatagtctttagcagct-----------------atcactactctagaacctcagatcagtcttgaaa 382  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||                 ||||||||||||||||||||||||||||||||||    
T  9866706 acaaaggttagtatcttcaaacaaaccaacaagatagtctttagcagcttcttgaagagcagaaacatcactactctagaacctcagatcagtcttgaaa 9866805  T
Q  383 tccttcgcagtttccctcagatcagtctctgaaacggaagcttccttaagaagctcaatgctc 445  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9866806 tccttcgc-gtttccctcagatcagtctctgaaacggaagcttccttaagaagctcaatgctc 9866867  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 218 - 348
Target Start/End: Complemental strand, 12531653 - 12531523
Alignment:
Q  218 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttc 317  Q
    ||||||||||||||| ||||||||||||   ||||||||| || |||| |||||| |||||||| |||||||||||||| ||||| || |||||||||||    
T  12531653 aaatctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttc 12531554  T
Q  318 aaacaaaccaaaaagatagtctttagcagct 348  Q
    ||||||||||| ||||||  ||| |||||||    
T  12531553 aaacaaaccaacaagataagcttcagcagct 12531523  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 348
Target Start/End: Original strand, 12546966 - 12547096
Alignment:
Q  218 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttc 317  Q
    |||||||||| |||| |||||| |||||   ||| ||||| || |||| |||||| |||||||| |||||||||||||| ||||| || |||||||||||    
T  12546966 aaatctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttc 12547065  T
Q  318 aaacaaaccaaaaagatagtctttagcagct 348  Q
    ||||||||||| ||||||  ||| |||||||    
T  12547066 aaacaaaccaacaagataagcttcagcagct 12547096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 38735625 - 38735561
Alignment:
Q  271 ataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaaaaagata 335  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  38735625 ataattgtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagata 38735561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 9870098 - 9870032
Alignment:
Q  262 tcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaa 328  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||    
T  9870098 tccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaa 9870032  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 218 - 325
Target Start/End: Complemental strand, 9894803 - 9894697
Alignment:
Q  218 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttc 317  Q
    ||||||||||||||| ||||||||||||   ||| ||||  || ||||  | |||||||||||||| ||||||||||||||| ||||  |||||||||||    
T  9894803 aaatctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactcacttagcatgaatagcgcaaatattagtatcttc 9894705  T
Q  318 aaacaaac 325  Q
    ||||||||    
T  9894704 aaacaaac 9894697  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 9894654 - 9894578
Alignment:
Q  351 cactactctagaacctcagatcagtcttgaaatccttcgcagtttccctcagatcagtctctgaaacggaagcttcctta 430  Q
    ||||||||| |||||||||| |||||||||| ||||  ||| ||||||||| |  |||||||||||||||||||||||||    
T  9894654 cactactctggaacctcagaccagtcttgaa-tcctgagcaatttccctcaca--agtctctgaaacggaagcttcctta 9894578  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 302
Target Start/End: Complemental strand, 12538759 - 12538675
Alignment:
Q  218 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcaca 302  Q
    |||||||||| |||| |||||||||| |   || |||||| ||  | | |||||| |||||||||||||||||||||||||||||    
T  12538759 aaatctaagcactcttgcctctgattatgcgagtgagttgaatacctttaggcatgatagtaactctcttagcatgaatagcaca 12538675  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 348
Target Start/End: Complemental strand, 13576509 - 13576379
Alignment:
Q  218 aaatctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttc 317  Q
    ||||||||||||| | |||||||||||||   || ||||| || |||| ||||||||||||||| ||||||||||||||||||||||| || ||||| ||    
T  13576509 aaatctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctc 13576410  T
Q  318 aaacaaaccaaaaagatagtctttagcagct 348  Q
    ||||||||||| ||||||  ||| |||||||    
T  13576409 aaacaaaccaacaagataagcttcagcagct 13576379  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 328
Target Start/End: Original strand, 34562649 - 34562729
Alignment:
Q  248 aagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaa 328  Q
    |||| ||||| || |||| ||||||||| ||||| |||||||||||||| ||||| |  || ||||| |||||||||||||    
T  34562649 aagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaa 34562729  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 34571448 - 34571523
Alignment:
Q  253 agttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaa 328  Q
    ||||| || |||| ||||||||| ||||| |||||||||||||| ||||| |  || ||||| |||||||||||||    
T  34571448 agttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaa 34571523  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 335
Target Start/End: Original strand, 43479645 - 43479758
Alignment:
Q  222 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaac 321  Q
    ||||||||||| |||||| ||||||   || ||||| || |||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  43479645 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaac 43479744  T
Q  322 aaaccaaaaagata 335  Q
    ||||||| ||||||    
T  43479745 aaaccaacaagata 43479758  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 320
Target Start/End: Complemental strand, 38799652 - 38799554
Alignment:
Q  222 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaa 320  Q
    |||||||||||  ||||||||||||   || || || ||||||| |||||| || |||||||||||||||||||| ||||||||||| || ||||||||    
T  38799652 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaa 38799554  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 38807153 - 38807079
Alignment:
Q  222 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaat 296  Q
    ||||||||||| |||||||||||||   || ||||| ||||||| |||||| |||||||||||||||||||||||    
T  38807153 ctaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaat 38807079  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 320
Target Start/End: Original strand, 38821865 - 38821963
Alignment:
Q  222 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaa 320  Q
    |||||||||||  ||||||||||||   || || || ||||||| |||||| || |||||||||||||||||||| ||||||||||| || ||||||||    
T  38821865 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaa 38821963  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 26592285 - 26592212
Alignment:
Q  262 tcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaaaaagata 335  Q
    |||| |||||| |||||||| | ||||||||||||||| || ||||||||||| |||||||| |||| ||||||    
T  26592285 tccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagata 26592212  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 348
Target Start/End: Original strand, 3929931 - 3930058
Alignment:
Q  221 tctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaa 320  Q
    |||||||||| | |||||||||||||   || ||||| || ||||  ||||||||||||||||||||||||||||| |||||||| || |||||||||||    
T  3929931 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaa 3930030  T
Q  321 caaaccaaaaagatagtctttagcagct 348  Q
    |||||||| ||||||  ||| |||||||    
T  3930031 caaaccaacaagatacgcttcagcagct 3930058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 21317700 - 21317618
Alignment:
Q  253 agttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaaaaagata 335  Q
    ||||| || |||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||    
T  21317700 agttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagata 21317618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 3928620 - 3928686
Alignment:
Q  262 tcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaa 328  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  3928620 tccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaa 3928686  T

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Target: scaffold0197 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 31137 - 31042
Alignment:
Q  253 agttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaaaaagatagtctttagcagct 348  Q
    ||||| || |||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||  ||| |||||||    
T  31137 agttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagct 31042  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 24860702 - 24860605
Alignment:
Q  223 taagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaa 320  Q
    |||||||||| ||||||||||||   ||||||||| || ||||  |||||||| ||||||||||||||||||||||| ||||| || |||||||||||    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaa 24860605  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 53290832 - 53290780
Alignment:
Q  283 ctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaaaaagata 335  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| ||||||    
T  53290832 ctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagata 53290780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 40036159 - 40036080
Alignment:
Q  256 tggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaaaaagata 335  Q
    ||||||||||  |||||||||||||||| ||| ||||| |||||||| | |||||| || ||||| | ||||| ||||||    
T  40036159 tggatgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagata 40036080  T

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