View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0988_low_2 (Length: 252)
Name: NF0988_low_2
Description: NF0988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0988_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 9866074 - 9866307
Alignment:
| Q |
29 |
atataagtgttctttataaaatttccaaatggttggatgtgttcatatagaactcctcacttagaattttacaattgagactctgaatttgaatcttcat |
128 |
Q |
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| T |
9866074 |
atataagtgttctttataaaatttccaaatggttggatgtgttcatatagaactcctcacttagaattttacaagtgagactctgaatttgaatcttcat |
9866173 |
T |
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| Q |
129 |
gagccaaagaaaatttaaacaaacaaagctccataaaagag---------aaaggattcaaatcctttta-ttgttgcagtgcatggagttacatggccg |
218 |
Q |
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| T |
9866174 |
gagccaaagaaaagttaaacaaacaaagctccataaaagagcaaggaagaaaaggattcaaatccttttagttgttgcagtgcatggagttacatggccg |
9866273 |
T |
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| Q |
219 |
ttagaaatgaacaatacaagaaaatcagtgattt |
252 |
Q |
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| T |
9866274 |
ttaataaggaaaactacaagaaaatcagtgattt |
9866307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 9870277 - 9870229
Alignment:
| Q |
38 |
ttctttataaaatttccaaatggttggatgtgttcatatagaactcctc |
86 |
Q |
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| T |
9870277 |
ttctttataaaatttccaaatggttggatgtgttcctatagaactcctc |
9870229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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