View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989-Insertion-1 (Length: 765)
Name: NF0989-Insertion-1
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989-Insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 665; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 8 - 762
Target Start/End: Original strand, 33079566 - 33080332
Alignment:
| Q |
8 |
caaatcacttatagtttccaatttctcagtcactgtttcctccaatttaccaacctagatttgaagctggtcaaaagcatttatattatctaaccatgct |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33079566 |
caaatcacttatagtttccaatttctcagtcactgtttcctccaatttaccaacctagatttgaagctggtcaaaagcatttctattatctaaccatgct |
33079665 |
T |
|
| Q |
108 |
tgcttcaa-cttctccaacttcaaaactataaaatttaattcattcctatcttcctcccacttttctttcaacttcctcaactctacaacttcagattcc |
206 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33079666 |
tgcttcaaacttctccaacttcaaaactataacatttaattcattcctatcttcctcccacttttctttcaacttcctcaactccacaacttcagattcc |
33079765 |
T |
|
| Q |
207 |
aactcactgttctttctttttaccacatcaattgcattctcatcatccactctttttcccttcagctccaaaacttcatgctctaacttagcattctttc |
306 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33079766 |
aactcactgttctttctctttaccacatcaattgcattctcatcatccactctttttcccttcagctccaaaacttcatgctctaacttagcattctttc |
33079865 |
T |
|
| Q |
307 |
tccttaccacatcaagtgcatttccatcttccaccccttttttcttcaactcctccaactcttcaactacctttccatcttccaccattttatcctccaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33079866 |
tccttaccacatcaagtgcatttccatcttccacccttttttccttcaactcctccaactcttcaactacctttccatcttccaccattttatcctccaa |
33079965 |
T |
|
| Q |
407 |
taccttgtttcgaaggtcatcaaaaccattactatcatctagccacttttccttcaactttgtcaactccaaaactttagattctaactcacagttcttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
33079966 |
taccttgtttcgaaggtcatcaaaaccattactatcatctagccacttttccttcaactttgtcaactccaaaactttagattccaactcacagttcttt |
33080065 |
T |
|
| Q |
507 |
gtttttagcacg-----------tgaagtgtattcctatcttccaccaacttttcattcaacttctgcaactccaaaactttagaatctagctcaaagtt |
595 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
33080066 |
gtttttagcacgtcaagtgtatttcaagtgtattcctatcttccaccaacttttcaatcaacttctgcaactccaaaacattagaatctagctcacagtt |
33080165 |
T |
|
| Q |
596 |
ctttgtttttagcacatcaagtgcattgccatcttccacacttttttctttcaactccaaaacttcattgtccaatacactattcttttttcttagcata |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33080166 |
ctttgtttttagcacatcaagtgcattgccatcttccacacttttttctttcaactccaaaacttcattgtccaatacaccattcttttttcttagcata |
33080265 |
T |
|
| Q |
696 |
tcaagttcattcccatcttccacattttatccatggcctaccaaacctcaacccataatccaacaag |
762 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
33080266 |
tcaagttcattcccatcttccacattttatccatggcctactaaacttcaacccataatccaacaag |
33080332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 415 - 712
Target Start/End: Original strand, 41519403 - 41519691
Alignment:
| Q |
415 |
ttcgaaggtcatcaaaaccattactatcatctagccacttttccttcaactttgtcaactccaaaactttagattctaactcacagttctttgtttttag |
514 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||| |||||||| | ||||| |
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|
| T |
41519403 |
ttcgaagctcatcaagagcattactatcatctaaccacttttccttcaacttctccaactccaaaactttaaattctagctcaaagttctttctgtttag |
41519502 |
T |
|
| Q |
515 |
cacgtgaagtgtattcctatcttccaccaacttttcattcaacttctgcaactccaaaactttagaatctagctcaaagttctttgtttttagcacatca |
614 |
Q |
| |
|
||| | ||||| ||| | ||||||||||| ||||| ||||| |||| | ||| | | || | |||| ||||||||||| ||| |||| |
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|
| T |
41519503 |
cacatcaagtgcatttccatcttccaccattttttccttcaatttctcaacctc---------acactccaactcaccactctttgtttttggcatatca |
41519593 |
T |
|
| Q |
615 |
agtgcattgccatcttccacacttttttctttcaactccaaaacttcattgtccaatacactattcttttttcttagcatatcaagttcattcccatc |
712 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||| ||||| |
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|
| T |
41519594 |
agcgcattgccatcttccacacttttttctttcaactccaaaacttcattgtctaattcacccttcttttttcttaacatatcaagttcattgccatc |
41519691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 595 - 718
Target Start/End: Original strand, 41509351 - 41509474
Alignment:
| Q |
595 |
tctttgtttttagcacatcaagtgcattgccatcttccacacttttttctttcaactccaaaacttcattgtccaatacactattcttttttcttagcat |
694 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| || ||||||||||||| ||| |
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|
| T |
41509351 |
tctttgtttttagcatatcaattgcattgccatcttccgcactttttttattcaactccaaaacttcattgtctaattcaaccttcttttttcttaacat |
41509450 |
T |
|
| Q |
695 |
atcaagttcattcccatcttccac |
718 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
41509451 |
atcaagttcattcccatcctccac |
41509474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 408 - 517
Target Start/End: Original strand, 41509176 - 41509285
Alignment:
| Q |
408 |
accttgtttcgaaggtcatcaaaaccattactatcatctagccacttttccttcaactttgtcaactccaaaactttagattctaactcacagttctttg |
507 |
Q |
| |
|
|||||| ||||||| |||| || | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
41509176 |
accttgcttcgaagctcattaagagcagtactatcatctagccacttttccttcaacttctccaactccaaaactttagattctagctcacagttctttc |
41509275 |
T |
|
| Q |
508 |
tttttagcac |
517 |
Q |
| |
|
|||||||||| |
|
|
| T |
41509276 |
tttttagcac |
41509285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 544 - 649
Target Start/End: Original strand, 41509219 - 41509321
Alignment:
| Q |
544 |
acttttcattcaacttctgcaactccaaaactttagaatctagctcaaagttctttgtttttagcacatcaagtgcattgccatcttccacacttttttc |
643 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||| ||||||||||| ||||||| |
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|
| T |
41509219 |
acttttccttcaacttctccaactccaaaactttagattctagctcacagttctttctttttagcacat---ttgcatttccatcttccaccattttttc |
41509315 |
T |
|
| Q |
644 |
tttcaa |
649 |
Q |
| |
|
||||| |
|
|
| T |
41509316 |
cttcaa |
41509321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 717 - 762
Target Start/End: Original strand, 41522525 - 41522570
Alignment:
| Q |
717 |
acattttatccatggcctaccaaacctcaacccataatccaacaag |
762 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41522525 |
acattttatccatggcctaccaaacctcaatccataatccaacaag |
41522570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 717 - 762
Target Start/End: Original strand, 41513559 - 41513604
Alignment:
| Q |
717 |
acattttatccatggcctaccaaacctcaacccataatccaacaag |
762 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
41513559 |
acattttatccatggcctaataaacctcaacccaaaatccaacaag |
41513604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 41519489 - 41519544
Alignment:
| Q |
300 |
ttctttctccttaccacatcaagtgcatttccatcttccaccccttttttcttcaa |
355 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
41519489 |
ttctttctgtttagcacatcaagtgcatttccatcttccaccattttttccttcaa |
41519544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 439 - 481
Target Start/End: Original strand, 41469601 - 41469643
Alignment:
| Q |
439 |
tatcatctagccacttttccttcaactttgtcaactccaaaac |
481 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
41469601 |
tatcatctagccacttttcctttgacttcgtcaactccaaaac |
41469643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 41509217 - 41509287
Alignment:
| Q |
164 |
ccacttttctttcaacttcctcaactctacaacttcagattccaactcactgttctttctttttaccacat |
234 |
Q |
| |
|
||||||||| ||||||||| |||||| | ||||| |||||| | ||||| |||||||||||||| ||||| |
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|
| T |
41509217 |
ccacttttccttcaacttctccaactccaaaactttagattctagctcacagttctttctttttagcacat |
41509287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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