View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989-Insertion-10 (Length: 195)
Name: NF0989-Insertion-10
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 43823370 - 43823178
Alignment:
| Q |
6 |
caaaattgtacccaactttga-gccttatga-tatgggttccgtgtgttcttgattacttattgctacattacagtatctggttatcatagt-gcga--t |
100 |
Q |
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| T |
43823370 |
caaaattgtacccaactttgaagccttatgaatatgggttccgtgtgttcttgattacttattgctacattacagtatctggttatcatagtggcgaatt |
43823271 |
T |
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| Q |
101 |
tc-tgatacatc-at-agtagatttttgctcattgcacttgggtgctgctgtatctttggggagttaatatctggcatatatcctatctgggctgg |
193 |
Q |
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| T |
43823270 |
tcttgatacatctataagtagatttttgctcattgcactt-ggtgctgctgtatcttt-gggagttaatatct-gcatatatcctatctgggctgg |
43823178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 43816407 - 43816215
Alignment:
| Q |
6 |
caaaattgtacccaactttga-gccttatga-tatgggttccgtgtgttcttgattacttattgctacattacagtatctggttatcatagt-gcga--t |
100 |
Q |
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||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |||| | |
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| T |
43816407 |
caaaattatacccaactttgaagccttatgaatatgggttccgtgtgttcttgatcacttattgctacattacggtatctggttatcatactggcgaatt |
43816308 |
T |
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| Q |
101 |
tc-tgatacatc-at-agtagatttttgctcattgcacttgggtgctgctgtatctttggggagttaatatctggcatatatcctatctgggctgg |
193 |
Q |
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| T |
43816307 |
tcttgatacatctataagtagatttttgctcattgcgctt-ggtgctgctgtgtcttt-gggagtcaatatct-gcatatatcctatctgggctgg |
43816215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 43830609 - 43830441
Alignment:
| Q |
26 |
agccttatga-tatgggttccgtgtgttcttgattacttattgctacattacagtatctggttatcata---gtgcgattc-tgatacatc-at-agtag |
118 |
Q |
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| T |
43830609 |
agccttatgaatatggtttccgtgtgttcttgatcacttattgctacattacagtatctggttatcatactggtgagtttcttgatacatctataagtag |
43830510 |
T |
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| Q |
119 |
atttttgctcattgcacttgggtgctgctgtatctttggggagttaatatctggcatatatcctatctgggc |
190 |
Q |
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| T |
43830509 |
atttttgctcattgcactt-ggtgctgctgtctcttt-gggagtcaatatct-gcatatatcctatttgggc |
43830441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 34803993 - 34803955
Alignment:
| Q |
35 |
atatgggttccgtgtgttcttgattacttattgctacat |
73 |
Q |
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| T |
34803993 |
atatggtttccgtgtgttcttgatcacttattgctacat |
34803955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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