View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989-Insertion-14 (Length: 129)
Name: NF0989-Insertion-14
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989-Insertion-14 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 5e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 5e-63
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 6250168 - 6250047
Alignment:
| Q |
8 |
catatttgatcaaaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccc |
107 |
Q |
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| T |
6250168 |
catatttgatcaaaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccc |
6250069 |
T |
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| Q |
108 |
catgttgatggaaacaatttga |
129 |
Q |
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| T |
6250068 |
catgttgatggaaacaatttga |
6250047 |
T |
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Target: chr8 (Bit Score: 119; Significance: 3e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 39428055 - 39428173
Alignment:
| Q |
11 |
atttgatcaaaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccat |
110 |
Q |
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| T |
39428055 |
atttgatcaaaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccat |
39428154 |
T |
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| Q |
111 |
gttgatggaaacaatttga |
129 |
Q |
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| T |
39428155 |
gttgatggaaacaatttga |
39428173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 44315691 - 44315775
Alignment:
| Q |
11 |
atttgatcaaaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatg |
95 |
Q |
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| T |
44315691 |
attttatcaaaatctggaatttgagaaaagaaaatttggattactccaaatgctatcatgtatggattgcttgaaatgtgacatg |
44315775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 44306164 - 44306237
Alignment:
| Q |
23 |
tctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgg |
96 |
Q |
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| T |
44306164 |
tctggaatttgagaaacgaaaatttcgattactccaaaaccgatcatgtatgggttgcttgaaatgtgacatgg |
44306237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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