View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989-Insertion-2 (Length: 618)
Name: NF0989-Insertion-2
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 32761639 - 32761363
Alignment:
| Q |
7 |
agtattttcattgatcttgatataccaaattcacaatgcacacaatttaaaaatttcaaattgttaattaaaaatagaaactattgtgtgtaggtggtca |
106 |
Q |
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| T |
32761639 |
agtattttcattgatcttgatataccaaattcacaatgcacacaatttaaaaatttcaaatttttaattaaaaatagaaactattgtttgtaggtggtca |
32761540 |
T |
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| Q |
107 |
tggtgtcttttgttctgacttgtgttgctgtccaatgcaattgtttatctgtcattatttgctatacaagacacccttgatgaaagtcgcatattcataa |
206 |
Q |
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| T |
32761539 |
tggtgtcttttgttctgacttgtgttgctgtccaatgcaattgtttatctgtcattatttgctatacaagacacccttgatgaaagtcgcatattcataa |
32761440 |
T |
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| Q |
207 |
attaagttgtatggtatctcacaagataaagacaagatagatctactttgagcatttttgtcatgtctaaattaata |
283 |
Q |
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| T |
32761439 |
attaagttgtatggtatctcacaagataaagacaagatagatctactttgagcatttttgtcatgtctaaattaata |
32761363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 479 - 618
Target Start/End: Complemental strand, 32761181 - 32761042
Alignment:
| Q |
479 |
tttatatatgttgatgatggctcataatctaacttaaaagtgccaacatggcataactagcttttgactgagttcgaagtgaaaagtccaagcaagatca |
578 |
Q |
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| T |
32761181 |
tttatatatgttgatgatggctcataatctaacttaaaagtgccaacatggcataactagcttttgactgagttcgaagtgaaaagtcaaagcaagatca |
32761082 |
T |
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| Q |
579 |
ttcacttacgaagaacaatgatctttaactacttacaatg |
618 |
Q |
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| T |
32761081 |
ttcacttacgaagaacaatgatctttaactacttacaatg |
32761042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 352 - 481
Target Start/End: Complemental strand, 32761350 - 32761221
Alignment:
| Q |
352 |
tatatgcataaattattctttactattaaagataaaatatataaaattaaactatttttgcatcaattgtaagatgtttttgtgaaagagttcaagaacc |
451 |
Q |
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| T |
32761350 |
tatatgcataaattattctttactattaaagataaaatatataaagttaaactatttttgcatcaattgtaagatgtttttgtgaaagagttcaagaacc |
32761251 |
T |
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| Q |
452 |
cattcaagcttaagaagctttgcgagcttt |
481 |
Q |
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| T |
32761250 |
cattcaagcttaagaagctttgcgagcttt |
32761221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 32761315 - 32761283
Alignment:
| Q |
280 |
aatatataaagttaaactatttttgcataaatt |
312 |
Q |
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| T |
32761315 |
aatatataaagttaaactatttttgcatcaatt |
32761283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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