View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989-Insertion-3 (Length: 529)
Name: NF0989-Insertion-3
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989-Insertion-3 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 8 - 529
Target Start/End: Complemental strand, 33445553 - 33445032
Alignment:
| Q |
8 |
tgttctatctcaaaggttttataggacaagaggtattagtttttactcgttaatttatatttttactcaaagactcacactccattatatctaaataaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445553 |
tgttctatctcaaaggttttataggacaagagatgttagtttttactcgttaatttatatttttactcaaagactcacactccattatatctaaataaaa |
33445454 |
T |
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| Q |
108 |
gtcccacacttcacgttctatatgactgatattgaggaacaacactatgttatccgatccactttccttatactaattacatacaacaatgtttatatgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445453 |
gtcccacacttcacgttctatatgactgatattgaggaacaacactatgttatccgatccactttccttatactaattacatacaacaatgtttatatgt |
33445354 |
T |
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| Q |
208 |
gttaagcttattgattccaaattaagtactaaggaacaacttccccatgcttaaaatgtataaattgtggaggaaatatatgtacttttgctttcaattg |
307 |
Q |
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| T |
33445353 |
gttaagcttattgattccaaattaagtactaaggaacaacttccccatgcttaaaatgtataaattgtggaggaaatatatgtacttttgctttcaattg |
33445254 |
T |
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| Q |
308 |
tttcacttcttttaaatcgtccattcatatactataacatgcaattcttagtaaaaactttcaatctttttaattgcatacttctcaaaattttcatttt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445253 |
tttcacttcttttaaatcgtccattcatatactataacatgcaattcttagtaaaaactttcaatctttttaattgcatacttctcaaaattttcatttt |
33445154 |
T |
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| Q |
408 |
ccccataacataatcaacatattaggtctctggtcatactattcaaccaagcccttgtctcttctactttggtccaaaaacacgaatcttatgttaaact |
507 |
Q |
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| T |
33445153 |
ccccataacataatcaacatattaggtctctagtcatactattcaaccaagcccttgtctcttctactttggtccaaaaacacgaatcttatgttaaact |
33445054 |
T |
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| Q |
508 |
tgcaaattttcttttctcttta |
529 |
Q |
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| T |
33445053 |
tgcaaattttcttttctcttta |
33445032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 39397115 - 39397155
Alignment:
| Q |
213 |
gcttattgattccaaattaagtactaaggaacaacttcccc |
253 |
Q |
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| T |
39397115 |
gcttattgaatccaaattaagtactaaggaacaacttcccc |
39397155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 39397371 - 39397459
Alignment:
| Q |
441 |
tcatactattcaaccaagcccttgtctcttctactttggtccaaaaacacgaatcttatgttaaacttgcaaattttcttttctcttta |
529 |
Q |
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|||||| |||||||||| |||||| ||||| ||||| | ||| ||||| ||||||| |||| ||||||||||| | ||| |||||||| |
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| T |
39397371 |
tcataccattcaaccaatcccttgcttcttcaactttagcccagaaacatgaatcttgtgttgaacttgcaaatgtgcttctctcttta |
39397459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 37686 - 37646
Alignment:
| Q |
213 |
gcttattgattccaaattaagtactaaggaacaacttcccc |
253 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37686 |
gcttattgaatccaaattaagtactaaggaacaacttcccc |
37646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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