View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989-Insertion-4 (Length: 505)
Name: NF0989-Insertion-4
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Complemental strand, 31863843 - 31863346
Alignment:
| Q |
8 |
ctagctatcttgattggtctactcactatcctaacatggcatttcacaaagatttatacaacgaagtctctaaatagtttggcttacgacctgcgttacg |
107 |
Q |
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| T |
31863843 |
ctagctatcttgattggtctactcactatcctaacatggcatttcacaaagatttatacaacgaagtctctaaatagtttggcttacgacctgcgttacg |
31863744 |
T |
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| Q |
108 |
aacttctgcaacgtcccatcttgaggatgtggaatattttgaactctactgctgaaatcacaactgctcaagttaagttgtctgagtatgttatcagaag |
207 |
Q |
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| T |
31863743 |
aacttctgcaacgtcccatcttgaggatgtggaatattttgaactctactgctgaaatcacaactgctcaagttaagttgtctgagtatgttatcagaag |
31863644 |
T |
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| Q |
208 |
ccacggtaacctagccactcaagcagagcaagttgaggttaacttttatctattcattgtactcttccttttctatatgttagaatttagataccatttt |
307 |
Q |
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| T |
31863643 |
ccacggtaacctagccactcaagcagagcaagttgaggttaacttttatctattcattgtactcttccttttctatatgttagaatttagataccatttt |
31863544 |
T |
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| Q |
308 |
cttttagtggtttattacttatttgtattgttccaannnnnnnccgcagatgtatgaatccatgagggctgtcacatgggcactgtttgctagtcgaaaa |
407 |
Q |
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| T |
31863543 |
cttttagtggtttattacttatttgtattgttccaatttttttccgcagatgtatgaatccatgagggctgtcacatgggcactgtttgctagtcgaaaa |
31863444 |
T |
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| Q |
408 |
gctctcaactcgataactgtcaagtataggaatggttttgtccaagcatttcatagagacttgaaggataataatattttttacatctacactgatct |
505 |
Q |
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| T |
31863443 |
gctctcaactcgataactgtcaagtataggaatggttttgtccaagcatttcatagagacttgaaggataataatattttttacatctacactgatct |
31863346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 8864513 - 8864679
Alignment:
| Q |
39 |
taacatggcatttcacaaagatttatacaacgaagtctctaaatagtttggcttacgacctgcgttacgaacttctgcaacgtcccatcttgaggatgtg |
138 |
Q |
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|||||||||||||||||||||||||||| | || || | | ||||||||| || | |||||||| ||||||||||||||||| || ||||||||||| |
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| T |
8864513 |
taacatggcatttcacaaagatttatacgaaaaaatcattgagtagtttggcatatggtctgcgttatgaacttctgcaacgtccgattttgaggatgtg |
8864612 |
T |
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| Q |
139 |
gaatattttgaactctactgctgaaatcacaactgctcaagttaagttgtctgagtatgttatcaga |
205 |
Q |
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| T |
8864613 |
gaatattttgaattctacttctgaaattacaacagctcaggtcaagttgtctcaatatgttatcaga |
8864679 |
T |
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