View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0989-Insertion-5 (Length: 464)
Name: NF0989-Insertion-5
Description: NF0989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0989-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 88 - 364
Target Start/End: Original strand, 17602341 - 17602616
Alignment:
| Q |
88 |
aaccatccaatatataaaataaccaaggtcagaattaattcaaccaatatcttaataaataaagtttcaaagcgacgcaatttcgataatttaaaatact |
187 |
Q |
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| T |
17602341 |
aaccatccaatatataaaataaccaaggtcagaattaattcaaccaatatcttaataaataaagtttcaaagcgacgcaatttcgataatttaaaatact |
17602440 |
T |
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| Q |
188 |
agtttcgtcaatataaaaataaagagacatcctttnnnnnnnnnnntacaaagtaaactctcatgatttcatcaaacgctcaatcgacctcaaaattaaa |
287 |
Q |
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| T |
17602441 |
agtttcgtcaatataaaaataaagagacatccttt-aaaaaaaaaatacaaagtaaactcttatgatttcatcaaacgctcaatcgacctcaaaattaaa |
17602539 |
T |
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| Q |
288 |
accgtatacatgagttctctatttaatcataaggtattcaaaattctatcaaaacaacttataatcttagactttct |
364 |
Q |
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| T |
17602540 |
accgtatacatgagttctctatttaatcataaggtattcaaaattctatcaaaacaacttataatcttggactttct |
17602616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 354 - 464
Target Start/End: Original strand, 17602752 - 17602861
Alignment:
| Q |
354 |
ttagactttctactaaacttaattctactgatatttctacttatccctactaataactatttaaggtcttcaccaaaatttaacatcaaccatactctcc |
453 |
Q |
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| T |
17602752 |
ttagactttctactaaacttaattctactgatatttctacttatcc-tactaataactatttaaggtcttcaccaaaatttaacatcaaccatactctcc |
17602850 |
T |
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| Q |
454 |
attaataattc |
464 |
Q |
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| T |
17602851 |
attaataattc |
17602861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 17602234 - 17602311
Alignment:
| Q |
8 |
cacacaaccagaacagtttactccactacaccaattcaaaagccaatacgcacgaacataatgctccaagcagaagaa |
85 |
Q |
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| T |
17602234 |
cacacaaccagaacagtttactccactacaccaattcaaaagccaatacgcacgaacataatgctccaagcagaagaa |
17602311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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